Sorex fumeus (smoky shrew): 130033118
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Entry
130033118 CDS
T10594
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130033118 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfum01009
]
130033118 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfum04515
]
130033118 (PCDH1)
Protein phosphatases and associated proteins [BR:
sfum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130033118 (PCDH1)
Cell adhesion molecules [BR:
sfum04515
]
Cadherins
Protocadherins
130033118 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
130033118
NCBI-ProteinID:
XP_055980808
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MDSGAGGRRCPEAALLFLGPIRMGPLRPSPGPGGQRWWLPPFLLALLLLLAPSPGHATQV
LYKVQEEQPPNTLIGSLAADYGLPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGDPCILEFEVSITDLVQNGSPRLLEGQIEVLDINDNTPNFASPIITLPIPEN
TNIGSLFPIPVASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEGKQPQLIVMGNLDR
ERLDTYDLTIRVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVTVKDMNDNAPSIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
AGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNQPGEVVAEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPSN
ASHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLTNHTLLEMLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSGKASKANKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRAKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDAAALEEIPLTQTSDFPPAATPAPAPTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacagcggggcgggcggccggcgctgccccgaggcggccctcctgttcctggggccc
atcaggatggggcccctgaggcccagcccaggccctgggggccagcggtggtggcttccc
cccttcctgctggctctgctgctcctgctggcgccgtccccaggccacgccacgcaggtc
ctgtacaaggtgcaggaggaacagccgcccaacacgctcatcgggagcctggctgctgac
tacgggcttcctgacgtgggccacctgtacaagctcgaggtgggcgccccgtacctgcgg
gtggacggcaagacgggtgacatcttcaccaccgagacctcaatcgaccgcgagggcctg
cgggagtgtcagaaccagctcccaggggacccgtgcatcctggagtttgaggtgtccatc
acggacctggtgcagaacgggagcccccggctgctggagggccagatcgaggtgctggac
atcaatgacaacactcccaacttcgcctcgcccatcatcacgctgcccatcccggagaac
accaacatcggctcgctcttccccatccctgtggcctcagaccgcgatgcggggcccaac
ggcgtggcctcctacgagctgcaggccgggcccgaggcgcaggagctattcgggctgcag
gtggccgaggaccaggaggggaagcagccgcagctcatcgtcatgggcaacctggaccgg
gagcgcctggacacctacgacctcaccattagggtgcaggatggcggcagccccccgcgg
gccagcagcgccctgctgcgggtcaccgtgctggacaccaacgacaacgcccccaagttt
gagcgaccctcgtacgaggctgagctgtcggaaaacagccccatcggccactcggtcatc
caggtgaaggccaatgactcggaccaaggggccaacgccgagattgactacaccttccac
caggcaccggaagtggtgcggcgcctcctgcggctggacaggaacacggggctcatcacg
gtgcagggccccgtggaccgggaggatctcagcaccctgcgcttctccgtgctggccaag
gaccgaggcaccaaccccaagagcgcccgcgcccaggtggtggtgaccgtgaaggacatg
aacgacaacgcgcccagcatcgagatccggggcattgggctggtgacgcaccaggatggt
atggccaacatctcggaggacgtggcagaggagacggcggtggctctggtgcaggtgtct
gaccgagacgagggcgagaacgccgctgtcacctgtgtggtggcgggcgatgtgcccttc
cagctgcgccaggccagcgagacgggaagcgacagcaagaagaagtacttcctgcagacc
accaccccgctggactacgagaaggtcaaggattataccatcgagatcgtggccgtggac
gcaggcaaccccccgctttccagcaccaactcgctcaaggtgcaggtggtggatgtgaat
gacaacgcgcccgtgttcacccagagcgtcacggaggtggccttcccggagaacaaccag
ccaggggaggtggtcgctgaggtcacggccagcgacgccgattcaggctccaatgcggag
ctggtgtactcgctggagccagagcccgctgccaaaggcctcttcaccatctctccagag
acgggtgagatccgggtgaagacgtccctggaccgggagcagcgagatagctacgagctg
aaggtggtggccgccgaccggggcagccccagcctgcagggcacggccaccgtgctggtc
aacgtactggactgcaatgacaatgaccccaagttcatgctgagcggctacaacttctct
gtgatggagaacatgccggcgctgagcccggtgggcatggtgaccgtcattgacggggac
aagggggagaacgcccgggtgcagctcaccgtggagcaggacaatggggacttcgtgatc
cagaacggcacgggcaccatcctgtccagcctgagctttgaccgggagcagcagagcacc
tataccttccagctcaaggccgtggatgggggcgtcccgccacgctcggcgtacgtcggc
gtcaccatcaacgtgctggacgagaacgacaatgcgccctacatcaccgccccatccaac
gcctcccaccggcttctgaccccgcagacgcgcctcggcgagacggtcagccaggtgacg
gccgaggacattgactctggggtcaacgctgagctcacctacagcatcgcggggggcaac
ccttatggactgttccagatcgggtcgcactcgggggctatcaccctggagaaggagatc
gagcggcgtcaccacggcctgcaccggctggtggtcaaggtcagcgaccgcggcaagccc
ccgcgctatggcacggccttggtccacctctatgtcaacgagacgctgaccaaccacacg
ctgctggagatgctgctgggccacagcctggacacgccactggacatcgacatcgccggc
gaccccgagtacgagcgctccaagcagcggggcaacatcctctttggtgtggtggccggc
gtggtggccgtggccttgctcatcgccctggccgtgcttgtgcgctattgccggcagcgg
gaggccaagagcggctaccaggccggcaagaaggagaccaaggacctgtacgcccccaag
cccagcggcaaagcctccaaggccaacaagagcaagggcaagaagagcaagtccccgaag
cccgtgaagcccgtagaggacgaggacgaggccgggctgcagaagtccctcaagttcaac
ctgatgagcgacgcccctggggacagcccccgcatccacctgcccctcaactaccctccc
ggcagccccgacctgggccgccactaccgctccaactccccactgccctccatccagctg
cagccgcagtcgccctcggcctccaagaaacaccaggtggtgcaggacttgccgcccgcg
aacacgttcgtgggcaccggggacaccacgtccacgggctccgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgagtcacc
ttctccgccaccagccaggcccaggagttgcaagacccgtcccagcacagctactatgac
agcggcctggaggagtcggagacgccgtccagcaagtcttcctcggggccccggctcggc
cccctggccctgcctgaggaccactatgagcgcaccacccccgacggcagcataggagag
atggagcaccccgagaacgacctgcgccctctgcctgacgtcgccatgacgggcacgtgc
acccgggaatgcagcgagtttggccactccgacacatgctggatgcctggccagtcgtcc
cccagccgccgcgccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggacgcggccgccttggaggagatccccctgacccagacctcggacttccca
cccgcagccactccggcgcccgccccgacggccaagcgcgagatctacctgtga
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