Sorex fumeus (smoky shrew): 130033123
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Entry
130033123 CDS
T10594
Name
(RefSeq) protocadherin beta-6-like
KO
K16494
protocadherin beta
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfum04515
]
130033123
Cell adhesion molecules [BR:
sfum04515
]
Cadherins
Protocadherins
130033123
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
130033123
NCBI-ProteinID:
XP_055980815
LinkDB
All DBs
Position
Unknown
AA seq
794 aa
AA seq
DB search
MALTKAHCEKWQVVTFILLLLWWEVDSEPIQYSVLEETESGTFVANLTKDLGLGKGELAI
RGAQVVFKGNRQLLQFNPQTYDLLLNEKLDREEMCGSTDPCVLPFQVILENPLQFFQAAL
RIQDINDHAPEFPTRKMVLKISEIATPGKVFPLKMAQDLDTGSNSLQSYRISPNPHFHIF
TQNRKDGRKFPELVLDKALDREEQSELRLILTALDGGSPPRSGSTEIQILVLDINDNAPE
FAQELYEVQIPENTPVGTLIISVSAKDLDAGIFGEVSYALFQVDGVDQPFEINAVTGEVR
LMRMLDFEELQSYQVDVEGTDGGGLSGKSSVIINILDVNDNAPELTMSSLINSIPENLPE
TMVAVFSVSDADSGQNQQVVCSIDEDLPFLLRPSVENFYTLVTESALDRESQAEYNITIT
VTDMGTPRLQTQHTITVLVSDMNDNAPAFSQPSYTLLVGENNSPALHIGSVSASDPDAGS
NAQVTYSLLPSQDPQLPLASLVSINADNGQLFALRSLDFEAVRAFEFGVGAWDRGSPALS
SQARVRVLVLDRNDNAPFVLYPLQNASAPCSELVPRAAEAGYLVTKVVAVDGDSGQNAWL
SFQLLKATEPGLFSVWAHNGEVRTARPLSERDAPKHRLLVLVRDNGEPPLSASVTLHVLL
VDGFSQPFLPLPDAPPDAPPDDRLTVYLVVALACVSLLFLFSVLAFVTVRLCRRAGPPAG
GPYPLPDAHFPGHLLDVSGAGTLSHSYQYEVCLAGGTGTNEFKFLKPILPTFPPQDTGEA
VEENPTFRNSFPFS
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcactgacaaaagcacactgcgagaaatggcaagtggtgaccttcattttattgctg
ctttggtgggaggtggattcagaaccgattcagtattctgtattggaggaaacagaaagt
ggcacgtttgtggccaacttgacaaaggatctgggactcgggaagggagaactggctata
cggggtgcccaggttgttttcaagggaaacagacagcttttgcagtttaacccacaaacc
tatgatttactgttaaatgagaagctggatcgtgaggagatgtgtggctccacagacccg
tgtgtgctacctttccaggtgatactagaaaatcccttgcagttttttcaagctgccttg
agaattcaagatataaatgatcatgccccagagttccccaccagaaaaatggtactgaaa
atatcagaaattgccacacctggaaaagtatttcccttgaaaatggcacaggatttagac
actggtagcaacagcctccagagctatagaatcagccccaacccccacttccacatcttt
actcaaaatcgcaaggatggcaggaagttccctgagctggtactggacaaggcattggac
cgcgaggaacagtccgagctcagactaattctcacagcattagatggtgggtctccgccc
cggtcaggttctacagagattcagattctggtactggacatcaatgacaatgccccagag
tttgcacaggagctttatgaggttcagatccctgaaaatacccctgttggcaccctgata
attagtgtctctgcaaaagatttagatgcaggaatttttggggaggtttcctatgcttta
tttcaagtagatggtgttgaccaaccctttgaaataaacgcagttacaggagaagttcga
ctgatgagaatgttggattttgaggaacttcaatcatatcaggtggatgtggagggcaca
gatggcgggggactatcagggaaaagttcagttatcatcaacattctggatgtaaatgac
aatgctccggaattaaccatgtcctcactcatcaactccattcctgaaaacttgccagaa
actatggtggcagttttcagtgtatcagatgcagattctggacaaaatcaacaagttgtt
tgttctatagatgaggaccttccctttcttctaagaccctcagtggagaatttttacacc
ttggtcacagaaagcgcactggaccgagagagccaggcagagtacaacatcaccatcacg
gtgacagacatgggcacccccaggctgcaaacacagcacaccatcacagtgctggtgtcc
gacatgaacgacaacgcccccgccttcagccagccctcctacaccctgctggtgggcgag
aacaacagccccgcactgcacataggcagcgtgagcgccagtgatcccgacgcgggcagc
aacgcccaggtgacctactcgctgctgccttcccaagacccacagctgccactcgcctcg
ctggtgtccatcaacgccgacaacgggcaactattcgcgctgcgctcgctggacttcgag
gccgttcgcgccttcgagttcggcgtgggcgcgtgggaccgcggctcgcccgcgctcagc
agccaggcacgggtgcgcgtgctggtgctggaccgcaacgacaacgcgcccttcgtgctg
tacccgctgcagaatgcgtcggcgccctgcagcgagctggtgcccagggcggcagaggcg
ggctacctggtgaccaaggtggtggcggtggacggcgactcgggccagaacgcctggctg
tcgttccagctgctcaaggccacggagcccgggctcttcagcgtgtgggcgcacaatggc
gaggtgcgcactgcgcggccgctcagcgagcgcgacgcgcccaagcacaggctgctggtg
ctggtcagggacaatggcgagccgccgctgtcggccagcgtcacgctgcacgtgctgctg
gtggacggcttctcgcagcccttcctgccgctgcccgacgcgccgcccgacgcgcctccc
gatgaccgcctcaccgtctacctggtggtggccttggcctgcgtgtcattgctcttcctc
ttctccgtactggcctttgtgaccgtgcgcctgtgccggcgggctggcccgcccgcaggg
ggcccctacccgctgcctgacgcgcacttcccgggacacctgctggacgtcagcggtgct
gggaccctgtcgcacagctaccagtatgaggtgtgtctggcggggggcactggcacgaat
gagttcaagttcctcaagcccattctgcccacctttccgccgcaggacactggtgaagca
gtagaggaaaaccccacctttaggaatagcttcccattcagttaa
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