Sorex fumeus (smoky shrew): 130033131
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Entry
130033131 CDS
T10594
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03440
Homologous recombination
sfum03450
Non-homologous end-joining
sfum04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130033131 (RAD50)
03450 Non-homologous end-joining
130033131 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
130033131 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfum03032
]
130033131 (RAD50)
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130033131 (RAD50)
DNA replication proteins [BR:
sfum03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
130033131 (RAD50)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
130033131 (RAD50)
BRCA1-C complex
130033131 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
130033131 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
DUF2703
AAA_29
Motif
Other DBs
NCBI-GeneID:
130033131
NCBI-ProteinID:
XP_055980822
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELLAVQRSMMCTQKSKKTEFKTLEGVITR
TKHGEKVSISSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITNKEAQLASSKEI
VKSYENELDPLKNRLKEIEQNLSKIMRLDNEIKALESRKKQMEKDNRELEQKMEKVFQGT
DEQLNDLYLNHQRTVREKEKRLVDCQRELEKLNKESRLFNQEKSELLVEQGRLQLQADRH
QEHIRARDSLIQSLSTQLELDGFERGPFSERQIKNFHKLVRERQESETEAARQLMNDFAE
KEALKQKQIDDIRDKKTGLGRIIELKSEILNKKQNELKNVKYELQQLEGSSDRILELDRE
LTKAEHELSKAEKNSNIETLKTEVISLQNEKTDLDRMLRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSDDLSSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHTNTELKRKEEQLSTYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAVLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMMGLVPMRQSIIDLKEKEIPELRNKLQNINRDMQRLKNDIEEQETLLGTVIP
EEESAKVCLTDITIMERFQMELKDVERKIAQQAAKLQGIDLERTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISSNLQRRQQMEDQTAELSTEVQS
LHREIKDAKEQINPLETALEKFQQEKEELINKKNTSNKMAQDKMNDIKEKVKNIHSYVKD
IENYIQDGKDDYKQQKETELNKVITQLNECEKHKEKINKEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQTLEEKIDNIKRNHSVAVGRQKG
YEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVTASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLIITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVTCNVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtgcggagttttgggatagaggacaaa
gataagcaaattatcacgttcttcagccccctcacaattttggttggacccaacggggcg
gggaagacgaccatcatcgagtgtctgaaatatatttgtactggagatttccctcctgga
accaaaggaaatacctttgttcatgatcctaaggttgctcaagaaacagatgtaagagcc
cagattcgtctgcaatttcgtgatgtcaatggagaacttctagctgtacagagatctatg
atgtgtactcagaaaagcaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaagcatggtgaaaaggtcagtatcagctctaagtgtgcagaaattgaccgagagatg
atcagttccctaggggtgtccaagtctgtattaaataatgtcattttctgccaccaagaa
gattctaattggcctttaagtgaaggaaaggctttgaagcaaaaatttgatgagattttt
tcagcaacaaggtacattaaagccttggaaacacttcgacaagtgcgccagacacaaggt
cagaaagtaaaagaatgtcaaacagaactaaaatatctgaagcaaaataaggaaaaagct
tgtgagattcgtgatcaaatcactaataaggaagcccagctagcatcttcaaaggaaatt
gtgaaatcctatgagaatgaacttgacccattaaagaatcgtctgaaagaaattgaacaa
aatctctctaaaataatgagacttgacaatgaaattaaagccttggagagccgaaagaag
cagatggagaaagataatagagaacttgaacagaaaatggaaaaggtttttcaaggaact
gatgagcagctaaatgatttatatctcaatcaccaaagaacagtgagagagaaagaaaag
agactggtagattgtcagcgtgaactggaaaaattaaataaagaatctaggcttttcaat
caagaaaaatcagaactacttgttgaacagggtcgtttacagctacaagcagatcgccat
caagaacatatccgagctagagattcattaattcagtctttgtcaacacaactagaatta
gatggttttgagcgaggaccattcagtgaaagacagattaaaaattttcacaaacttgtg
agagagaggcaagaaagtgaaacagaagctgccagacaactgatgaatgattttgcagaa
aaagaggcactgaaacaaaagcagatagatgatataagggataagaaaactggattggga
agaataattgagttaaaatcagaaatcttgaataagaagcagaatgaattgaaaaacgtg
aaatatgaattacagcagttggaaggatcttcagacaggattcttgaactggaccgggag
cttacgaaagctgaacatgagctaagcaaagctgagaaaaacagcaatatagaaacgtta
aaaacagaagtaataagccttcaaaatgagaaaacagatctagataggatgctgcgtaag
ttggaccaggagatggagcagttaaaccatcatacaacaacacgtacccagatggagatg
ctgactaaagacaaagctgataaagatgaacaaatcagaaaaataaaatctagacacagt
gatgatttatcttcattattagggtattttcctaacaaaaaacaacttgaagactggctt
catagtaaatcaaaagaaattaatcagacaagagacaggcttgctaagttgaataaggaa
ctagcttcagctgagcaaaataaaaaccatacaaatactgagctaaaaagaaaggaagag
cagttatccacttatgaagacaagctgtttgatgtttgtggtagccaggattttgaaagt
gatttagatagacttaaagaagaaattgaaaaatcctcaaaacaacgagccgtgctggct
ggagccacagcagtttactcccagtttatcactcagctcactgatgaaaaccaatcctgt
tgccccgtctgtcagagagtttttcaaactgaagctgaattacaagaagtcatcagtgat
ctgcagtctaagctgcgacttgctccagataaactcaagtcaacagaatctgagctaaag
aaaaaagagaaacggcgtgatgaaatgatgggacttgtgcctatgaggcaaagtataatt
gatttgaaggagaaagaaataccagaattaagaaacaaactgcagaatatcaatagagat
atgcaacggctaaagaatgacatagaagaacaggaaacgctcttgggtacagtaatacca
gaggaagaaagtgctaaagtatgtctaacagatattacaattatggaaagattccagatg
gaacttaaagacgttgaaagaaaaattgcacaacaagcagctaagctacaaggaatagac
ttggagagaactgttcaacaagtaaaccaggaaaaacaggaaaaacaacacaaattagat
acagtttccagtaagattgaactgaataggaagcttatacaggaccagcaggaacagatt
caacacctaaaaagtacaacaaatgaacttaaatcagagaaacttcagatatcctctaat
ttacaacgtcgtcagcaaatggaggatcaaaccgcagaattgtccaccgaagtacagtct
ttacacagagaaataaaggatgcaaaagagcagataaatcctttggagacagcattggaa
aagttccagcaggaaaaagaagaattaataaacaaaaaaaatacaagcaacaaaatggca
caggataagatgaatgatataaaagagaaggttaaaaacattcacagttatgtgaaagac
attgagaattatattcaagatggaaaagatgactataaacagcaaaaggaaactgagctg
aataaagtaataactcaactaaatgaatgtgagaaacacaaagaaaagataaataaggaa
atgggaatcatgagacaagatattgatacacagaagatacaagaaagatggctacaggat
aaccttactttaagaaaaagaaatgaagaacttaaagaagttgaagaagaaaggaaacaa
catttgaaagaaatgggtcagatgcaggttttgcaaatgaagaatgaacatcaaacattg
gaagaaaaaatagataacataaaaagaaatcacagtgtggcagtagggcggcaaaaaggt
tatgaggaagaaattattcattttaagaaagaacttcgagaacctcagtttcgggatgca
gaggaaaagtacagagaaatgatgattgttatgagaacaacagagcttgtaaataaagat
ctagacatttattataagacccttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaataaaattattcgtgacctttggcgaagcacctatcggggacaggatatt
gaatacatagaaattcggtctgatgctgatgaaaatgtaacagcttcagataaaagacgg
aattacaactaccgagtggtgatgctaaaaggagacacagccttggatatgcgaggacga
tgcagtgccggacaaaaggtattggcctcgcttatcattcgcttggccttggctgaaact
ttctgcttgaactgtggaattcttgcattggatgagccaactaccaatcttgacagagag
aacattgaatctcttgcacatgctctggttgagataataaaaagtcgttcacagcaacga
aacttccagcttctgataattactcatgatgaagattttgtggaactcttggggcgttct
gaatatgtggagaagttctacagaattaagaagaacatcgatcagtgctcagagattgtg
acatgcaatgttagctcactgggatcgtatgttcattga
DBGET
integrated database retrieval system
