Sorex fumeus (smoky shrew): 130033270 Help Entry 130033270         CDS       T10594                                  Symbol AFDN Name (RefSeq) LOW QUALITY PROTEIN: afadin   KO K05702   afadin Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04014   Ras signaling pathway sfum04015   Rap1 signaling pathway sfum04024   cAMP signaling pathway sfum04517   IgSF CAM signaling sfum04520   Adherens junction sfum04530   Tight junction sfum04670   Leukocyte transendothelial migration Brite KEGG Orthology (KO) [BR:sfum00001]  09130 Environmental Information Processing   09132 Signal transduction    04014 Ras signaling pathway     130033270 (AFDN)    04015 Rap1 signaling pathway     130033270 (AFDN)    04024 cAMP signaling pathway     130033270 (AFDN)   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     130033270 (AFDN)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04520 Adherens junction     130033270 (AFDN)    04530 Tight junction     130033270 (AFDN)  09150 Organismal Systems   09151 Immune system    04670 Leukocyte transendothelial migration     130033270 (AFDN) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RA DIL PDZ FHA PDZ_6 RA_3 RA_2 PDZ_2 RASSF8-10_RA Yop-YscD_cpl Motif Other DBs NCBI-GeneID:  130033270 NCBI-ProteinID:  XP_055980863 LinkDB All DBs Position Unknown AA seq 1789 aa AA seqDB search MSAGGRDEERRKLADIIQHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI RVSSTATTQDVIETLAEKFRPDMRMLSSPRYSLYEVHVSGEERRLDIDEKPLVVQLNWNK DDREGRFVLKNENDALPLKKAQSNGPDKQEKEGVIQNFKRTLSKKEKKEKKKREKEVSRQ VSEREERLFPGEDVENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRS SDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGLEKENPREYCIAR VTLPPGAQHSDEKGAKEAILEDDECPLQIFREWPSDKGILVFQLKRRPPDYVPKKGRKHS DGKVARARERAEGAGYGSALPPEKLPYLVELSPGRRNHFAYYNSHAHEDGSDSRDKPKLY RLQLSVTEVGTEKLEDSSIQLFGSGIQPHHCDLTNMDGVVTVTPRSMEAETYVEGQRISE TTVLQSGMKLQFGAAHVFKFVDPSQDHALAKRTVQETTFDLGGDVHGGAGLPTSKSATRL DSERGTSACSTAERGLVKPMIRLEQQQELRRQEGRPQDAAGPELTLPASIEFRENAEDSF LSAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQYRPDASASERPHRVIAIVSKMVSMME SVIQKQKNIAGALAFWMANASELLNFIKQDRDLSRITVDAQDVLAHLVQMAFKYLVHCLQ SELNNYMPAFLDDPEENSLQRPKIDDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFIN MWLFNRLVTDPESGLCSHYWGAIIRQQLGHVEAWAEKQGLELAADCHLSRIVQATTLLTM DKYTSEDIPAINSTCFKLNSLQLQALLQNYHCAPDEPFIPGDLIENVVAVAENTADELAR SDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNLPSGLQEFLDPLCQRGFCRLIPHTRSPG TWTIYFEGADYESHLTRESAELAQPLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGI YVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI YHGLATLLNQPSPMMQRVADRRGSGKPRPKSEGFELYNNSAPNGSPESPQLPWTEYTEPK KLPGEDRLMKNRADHRSSPNVANQLPSPGGKSAYAPGATAKITSVSTGNLCSEEQTPPPR PEAYPIPTQTYTREYFTFPASRAQDRTAPPQNQWPNYEDKAPMLTDVSDSHSARQRVTRS QEELREDRACGLEHQMDSDLWVTQSSSLGSSASSQEHLDHSSKPSTPASTLTKSGPGRWK TPALVPAPPVALSQPLRTDLPPPPPPPPAHYDLDGVALDLPLPPPPASQLGPAPAERKKR EEQQRWYEKEKARLEEERERKRREQERKLGQMRTQALHPAPAPAPPAPPARPEKPAALPR PPETVIRELQPQQQPRTIERRDLQYITISKEELASGDSLSPDPWKRDAKEKLEKQQQLHI VDMLSREIQELQSKATRSAEESDRLRKLMLEWQFQKRLQESKQKDEDDEEEEEEDVDTVL IMQRLEAERRARDEERRRQQQLEEMQQREADDRVRLDEERRQQEEERGRRDAEEKRRQEE GYYSRLEAERRRQHEEAERRLLEAEEPGLCRPPLPRGYEPTPPGPAAHPPPPPQRAASYL HTQALSPDSLYTAKFVAYNEEEEEEDCGPAGPNSYMGSTGALLGAHEVHRDPREKLCRSQ ETGPPGSPGAPENLTFKERQRLFSQGQDVSDKVKASRKLTELEQELNTK NT seq 5370 nt NT seq  +upstreamnt  +downstreamnt atgtcggcgggcggccgcgacgaggagcggcggaagctggcggacatcatccagcactgg aacgccaaccggctcgacctgttcgagatcagccagcccaccgaggatttggagttccat ggggtgatgaggttttactttcaagacaaagctgctggaaactttgccaccaagtgcatc cgggtgtccagcacggccaccacgcaggatgtgattgagacgctggcagagaagttccgg ccagacatgcgcatgctgtcctcgcccaggtactctctgtatgaggtgcacgtcagcgga gaagaaagaagattggatatagatgagaagcccctagtcgtgcagttgaactggaataaa gatgatcgagagggccgattcgtgcttaagaatgagaacgatgctctgcctctcaagaag gctcagagcaatggccccgacaagcaggagaaggagggcgtcatccagaacttcaagaga acactctcaaagaaggagaagaaagagaagaagaagcgtgagaaagaggtgtcgcggcag gtgtcggagagagaggagcgcctgttcccaggagaggacgttgagaattcccgactggct gccgaagtttacaaagacatgcccgagaccagcttcactcgcaccatctccaaccctgag gtggtcatgaagcgccggcggcagcagaagctcgagaagaggatgcaggagttccggagc tccgacgggcggccagactcaggtgggacgttgaggatctatgctgacagcctaaagccc aacatcccctacaagaccatcctgctctccaccacggaccctgcggattttgctgtggca gaagcgctggagaagtacgggctggagaaggagaatcccagggagtactgcatcgcccgg gtcacgctacctccaggtgctcaacactcggatgagaaaggtgctaaggaagccatcctc gaggatgatgagtgtcctttacagatcttccgggagtggcccagcgataaagggatcctc gtcttccagctgaagagacggcctccagactacgtgcccaagaagggcaggaagcacagt gacgggaaggtggcgagggcgagggagcgggccgagggggccggctacggctctgcgctc ccgcccgagaagctgccgtacctggtggagctcagcccagggaggaggaaccactttgcc tactacaactcccacgcgcacgaagatggttctgactccagggataagccgaaactctac cgcctgcagctcagcgtcaccgaggttgggacagagaagctggaggacagctccatccag ctcttcgggtcgggaattcagccccatcactgcgacctcaccaacatggatggtgtggtg accgtcacaccgcgcagcatggaggccgagacgtacgtggaggggcagcgcatctctgag accaccgtcctgcagagcggcatgaagctacagtttggggcggcacacgtgttcaagttt gtggaccccagccaggaccacgctctcgccaagaggaccgtgcaggagacgacgttcgat ctaggaggggacgtgcacggtggcgcaggactgcccacgagcaagagcgccaccaggctg gacagcgagcgtggcacatcagcctgtagcaccgctgagcgtggcctggtgaagcccatg atccggttggagcagcagcaggagctacgcaggcaggagggcagaccccaggatgctgcc gggccggagctgacactgcccgcgagcatcgagttccgggaaaatgctgaagactcattt ctctccgccattatcaactacacaaacagctcaactgtgcactttaagttatcgccgacg tacgtgctgtatatggcatgtcggtatgtactgtccagccagtacagacctgacgccagt gcctccgagcgtccccacagagtgattgccattgtcagcaagatggtgagcatgatggag agcgtgatccagaagcagaagaatatcgcaggggcgcttgctttctggatggcgaatgcc tccgagcttctcaacttcatcaagcaggaccgggacctcagtcgcatcaccgtggacgcc caggacgtgcttgcgcacctggtgcagatggccttcaagtacctggttcactgcctccag tcagaattgaataactatatgccagcatttctggatgaccctgaagagaacagtttgcaa agaccaaaaatcgatgatgtcctgcacacgctcacgggggccatgtccctgctgcgccgc tgccgtgtcaacgctgccctcaccatccagctcttctctcagctcttccacttcatcaac atgtggctcttcaacaggctggtcaccgaccctgagtcggggctgtgctcgcactactgg ggggccatcatccgccagcagctgggccacgtggaggcctgggccgagaagcagggtctg gagctggcagccgactgtcacctcagcaggatcgtgcaggccaccactctgctcaccatg gacaagtacacatccgaggatatccctgccatcaacagcacctgctttaagctgaactcg ctgcagctgcaggctctgttgcagaattaccactgtgcgcccgatgagcccttcatcccc ggggatctgattgagaacgtggtggccgtggcagagaacacggccgatgagctggcccgc agcgacggccgggaggtgcagctggaggaggaccccgacctgcagctgcccttcctgctg cctgaggacggctactcctgtgatgtcgtcaggaacctccccagcggcctgcaggagttc ctggaccctctgtgccagcgcgggttttgcaggttgattcctcacacacgatcgccgggc acgtggacaatatacttcgaaggcgcagattacgagagccacctcacacgggagagtgca gaactggcccagcctctgaggaaagagccggaaatcatcaccgtgaccctgaagaagcag aatggaatgggactgagcatcgtggcggccaagggtgcaggtcaggataaactgggaatc tatgtcaagtcggtcgtgaaaggaggcgcagctgatgtggatggacgcctggctgcaggc gaccagctcctcagtgtggatgggcgaagtctggtaggactctctcaggaaagggctgca gagctcatgaccaggaccagttccgtggtcacactggaagtggccaagcaaggagccatc taccacggcctcgccaccctgctcaaccagccgtcccccatgatgcagagagttgcagat cgccgaggctcggggaagccccgtcccaagagtgaaggctttgagctctacaacaactca gcacccaacgggtccccggaaagtccgcagctgccctggacagagtacactgagcccaag aaattgccgggcgaggacaggctgatgaagaacagggctgaccaccgttccagccctaat gttgcaaaccagcttcccagccccggagggaagagtgcgtacgcccctggagcaaccgcc aagatcacctctgtctccaccgggaacctgtgctctgaggaacaaacccctccacctcgg cccgaggcctaccccatccccacgcagacctacacccgggagtacttcaccttccccgcc tccagggcccaggaccgcacggcgcctccccagaaccagtggccaaactatgaggacaag gctcccatgctcacagacgtcagtgactcccattccgcgcgtcagcgggtgacgcgctca caggaggagctgcgggaagacagagcctgcggcctggagcaccagatggacagtgacctg tgggtcacccagagctcctcgctgggctccagcgcgtccagccaggagcacctggaccac tcctccaagcccagcaccccggcctccacactcaccaaaagcggcccgggccgctggaag acgcccgccctggtgccggcccctccggtggcgctgtcccagcctctccggacagacctg cccccgccgcccccgccgccccccgcgcactatgacctggacggggtggccctggacctg cccctcccgccgccccccgcgagccagctgggccccgcgccggccgagcgcaagaagcgg gaggagcagcagcgctggtacgagaaggagaaggcccggctggaggaggagcgggagcgg aagcggcgcgagcaggagcggaagctgggccagatgcgcacgcaggccctgcaccccgcc ccggcgcccgcgccccccgcgccccccgcccggcccgagaagcccgcggcgctgcccagg cctccggagacggtcatccgggagctgcagccccagcagcagccccgcacgatcgagcgc cgggacctgcagtacatcaccatcagcaaggaggagctggcctcgggcgacagcctgtcc ccggatccctggaagcgcgacgccaaggagaagctggagaagcagcagcagctgcacatc gtggacatgctgagccgcgagatccaggagctgcagagcaaggccacgcgcagcgccgag gagagcgaccgcctgcgcaagctcatgctggagtggcagttccagaagcggctgcaggag tcgaagcagaaggatgaggacgacgaggaggaggaggaggaggacgtggacaccgtgctg atcatgcagcgcctggaggccgagcgcagagcacgggacgaggagcggcggcggcagcag caactggaggagatgcagcagcgggaggcagacgaccgtgtgcggctggacgaggagcgc cgtcagcaggaggaggagcgtggccggcgtgacgccgaggaaaagcggcgacaggaagaa gggtattacagccgcctggaagccgagaggcgccgacagcacgaggaggctgagcgccgg ctgctggaagccgaggagccgggcctctgccgccctccgctcccgcggggctatgagccc accccccctggccccgcggcccaccctcctcccccgccccagcgggccgcctcctacctc cacactcaggccctctcccccgactctctgtacaccgccaagttcgtggcttacaacgag gaggaggaggaggaggactgcggcccagcaggaccaaactcttacatgggctccacaggg gccttgctcggcgcccatgaggtgcatcgggaccccagagagaagctgtgtagaagccaa gagacaggtccacctggaagtcctggagcacctgaaaacttgacgttcaaagagcgccag cgtctcttctcacaaggtcaggacgtgtcggataaagtgaaagcgtcccggaaactgacg gaactggaacaggagctgaacaccaagtga

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