Sorex fumeus (smoky shrew): 130033361
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Entry
130033361 CDS
T10594
Symbol
SCRIB
Name
(RefSeq) protein scribble homolog
KO
K16175
protein scribble
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04390
Hippo signaling pathway
sfum04530
Tight junction
sfum05165
Human papillomavirus infection
sfum05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
130033361 (SCRIB)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130033361 (SCRIB)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
130033361 (SCRIB)
09172 Infectious disease: viral
05165 Human papillomavirus infection
130033361 (SCRIB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
LRR_8
LRR_14
LRR_4
PDZ_2
LRR_9
Pept_S41_N_bact
LRR_13
LRR_LRWD1
MscS_porin
Motif
Other DBs
NCBI-GeneID:
130033361
NCBI-ProteinID:
XP_055980999
LinkDB
All DBs
Position
Unknown
AA seq
1588 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDRRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIRFCKALEIADFSGNPLSRL
PEGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLPASLSFLVKLEQLD
LGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGSLRRLVCLDVSENRLEELPAELG
GLALLTDLLLSQNSLQRLPDGIGQLKQLSILKVDQNRLCEVTEAIGGCENLSELVLTENL
LTALPHSLGKLTKLTNLNVDRNRLEVLPPEIGGCLALSVLSLRDNRLVSLPPELAHTAEL
HVLDVAGNRLQSLPLALTHLNLKALWLAENQAQPMLRFQTEDDARTGEKVLTCYLLPQQP
PPSLEDQPLRDSPPESWSDAPLSRVSVIHFLETPTGDEDPEEAAEKRGLQRRATPHPSEL
KVMKRGVEERRGEAPACRPGPSAPSPPVEERRLSVGSGPSEGSAVSTSTASQGEPEAPAT
EVAAPGQQEADPEDSLEESFEEPTVHFAEDVPLPSAGEEGEGGPLEAPWPLPGGRQRLIR
KDTPHYKKHFKISKLPQPEAVAALLQGAAPETEGLAGPGGWRNGPHTPWAPRAEEEEKEE
DNAEEEEETMTKEKEAVAPTPSVKGVSFDQANNLLIEPARIEEEELTLTIVRQTGGLGIS
IAGGKGSTPYKGEDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVDLHDAEHHQAVDALR
GAGTTVQMRLWRERMVEPENAVTVTPLRPEDDSSPRERRPAGLRLPLLPAEPPRHRHVAC
LARSERGLGFSIAGGKGSTPYRAGDGGIFISRIAEGGAAHRAGTLQVGDRVLSINGVDMT
EARHEHAVSLLTAATPTIALLLEREAGGSPPPSPPPQPPSPHTAAATPALTASPAECGPL
RLTPSLLAVALEGPYPVEEICLPRAGGPLGLSIVGGSDHSSHPFGVQEPGVFISKVLPRG
LAARSGLRVGDRILAVNGQDVRGATHQEAVGALLRPCLELVLLVRRDPPPPGMRELRIHK
APGEKLGISIRGGAKGHAGNPWDPTDEGIFISKVSPTGAAGRDGRLRVGQRLLEVNQQSL
LGLTHAEAVQLLRSVADSLTVLVCDGFDASTPGPPEVSPGTIANPLVASLSRRHSLESLS
SVDRETSPEGKDDLPLQTPPPWGLDTVLAPSGKTAEAPCLPGQPPLPSPPSPDELPASVK
QAYRTFAAVPGPALPQDDLVQPLTPGPAAPPEQLSFRERQKYFELEVRAPPAEGPPKRVS
LVGADDLRKMQEEEARKLQQKRAQMLRDAAQVGRTPDPDDNGELEPEEPPWAGPGLPAGP
GPGSPPLPGGSAPVRTAKAERRHQERLRVQSPEPPAPPEPERALSPAERRALEAEKRALW
RAARMKSLEQDALRAQMVLSKSQDGRGKRGPLERLAESPSPAPTPSPTPLEDLSSQTSSS
PGRLALSGRRFDYRVFAALPSSRPLCGIQSPGLTEDMRSLEPSPSPGLQPEDGEVAMVLL
GRPSEEVALCSSRRPVRPGRRGLGPVPS
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagtgcatcccgctctggcgctgcaaccggcacgtggagtccgtggaccggcgg
cactgctcgctgcaggccgtacccgaggagatctatcgctacagccgcagcctggaggag
ctgctgctcgacgccaaccagctgcgcgagctgcccaagcccttcttccggctgctgaac
ctgcgcaagctgggcctgagcgacaacgagatccagcggttgccccccgaggtggccaac
ttcatgcagttggtggaactggacgtgtcccgaaatgacatccccgagatccccgagagc
atcaggttctgcaaggccctggagatcgccgacttcagcgggaaccccctgtccaggctc
cctgaaggcttcacccagctccgcagcctggcccacctcgccctgaatgacgtgtccctg
caggcactgcccggggacgtgggcaacctggccaacctggtgaccctggagctgcgggag
aacctgctcaagtccttgcccgcgtccctgtctttcctggtcaagctggagcagctggat
ctgggcggcaacgacctggaagtgctgcctgacactctgggggctctgcccaaccttcgg
gagctgtggctggacaggaaccagctgtccgcgctgcccccggagctggggagcctgcgg
cgcctggtgtgcctggacgtgtccgagaaccggctggaggagctcccggctgagctgggc
gggctggcgctgctcacggacctgctgctctcgcagaactcgctgcagcggctgcctgat
ggcatcggccagctgaagcagctgtccatcctgaaggtggaccagaaccgcctctgtgag
gtgaccgaggccatcgggggctgcgagaatctgtcggagctggtcctcacagaaaaccta
ctgacggccctgccacactccctgggcaagctgaccaagctgaccaacctcaatgtggac
cggaaccgcctggaggtgctgccacccgagattggaggctgcctggccctcagcgtgctc
tccttgagggacaaccgcctggtgtcactgccacccgagctcgcccacactgccgagctg
cacgtgcttgacgtggctgggaaccggctgcagagcctgccgttggccctcacccacctc
aacctcaaggccctgtggctggcggagaaccaggcacagcctatgctccgcttccagaca
gaagatgacgcgcggacgggggagaaggtcctcacttgctacctgctgccccagcagccc
ccacccagcctcgaggaccagccgctgcgggacagccccccggagagctggagtgacgcc
ccgcttagccgggtcagcgtcatccacttcctggagacccccacgggcgacgaggaccct
gaggaagccgcagagaagcggggcctgcagcgtcgggccactcctcaccccagcgagctg
aaggtgatgaagagaggcgtggaagagcgccggggagaagctcctgcctgcaggccaggc
cccagcgccccctcaccccccgtggaggagaggaggctgagtgtggggtccggcccaagt
gaaggctcggccgtgtccacaagcacggcttcccagggggagcccgaggcccctgcgact
gaggtggcggcgccgggccagcaggaagccgacccggaggactccctggaggagagcttt
gaggagcccacagtgcacttcgcagaggatgtgccgctgcccagtgcaggtgaggagggc
gaggggggccctctggaggcaccgtggcccctgcccggcgggaggcagcggctcatccgc
aaggacacgccgcactacaagaagcacttcaagatctccaagctgccccagcccgaggcc
gtggccgccctgctgcagggcgccgcaccggagaccgagggcttggccgggcccgggggc
tggcgcaatggcccccacacgccctgggcgcctcgagctgaggaggaggagaaggaggaa
gataatgcggaggaggaggaggagacaatgaccaaggagaaagaggcagtggcccccacg
ccatctgtcaagggcgtgtcgtttgaccaggccaataacctgctgatagagcccgctcgc
attgaggaggaagagctgactctcaccatcgtgcggcagacaggcggcctgggcatcagc
attgcgggcggcaaaggctccaccccctacaagggtgaggatgagggcatcttcatctcc
cgcgtgtccgaggaggggcctgctgcccgcgctggtgtccgagtcggggacaaactcctg
gaggtgaacggcgtggatctgcatgatgcggagcaccaccaggccgtggacgcgctgcgg
ggggccggcaccacggtgcagatgcggttgtggagggagcgcatggtggagcctgagaac
gccgtcaccgtcacgcccctgcggcctgaggacgactccagcccacgggagcggcggccg
gccggcctgcgcctgcccctgctgccagccgagcccccccggcaccgccacgtggcctgc
ctggcacgcagcgagcggggcctgggcttcagcatcgcgggcgggaagggttccacgcca
taccgggcaggagatgggggcatcttcatctcgcgcatcgcggagggcggcgccgcccac
cgggcgggcaccctgcaggttggagaccgagtcctctcgatcaacggcgtggacatgacg
gaggccaggcacgagcacgccgtgtccctgctgaccgctgccacccccaccattgcgctg
ctgctggagcgggaggcggggggctccccgccccccagcccccctccacagcccccctcc
ccccacaccgctgctgccacgcccgcgctcactgccagccctgctgagtgcgggcccctg
cgcctcacccccagcctgctggctgtggccctggagggcccgtacccggtggaggagatc
tgcctgccgagagccgggggcccgctggggctcagcatcgtggggggctccgaccactcg
agccacccctttggggtgcaggagccaggagtgttcatctccaaggtgctgccgcggggc
ctggcggcgcgcagcggcctgcgagtgggggaccgcatcctggcggtgaacgggcaggat
gtgcgtggggccacgcaccaggaggcggtgggcgcgctgctgcggccgtgcctggagctg
gtgctgctggtgcgcagggacccgccgccgcccggcatgcgcgagctccgcatccacaag
gcgcccggggagaagctgggcatcagcatccgcgggggggccaagggccacgcaggcaac
ccctgggaccccaccgacgagggcatcttcatctccaaggtcagccccacgggagcggct
ggccgcgatggacgcctgcgcgtggggcagcggctgctggaggtgaaccagcagagcctg
ctgggcctgacgcatgcggaggctgtgcagctgctacgcagcgtggctgacagcctcacg
gtgctggtctgcgacggcttcgacgccagcacccccggccctcccgaggtgtccccgggc
accatcgccaaccccttggtggccagcctgagccgccggcacagcttggagagcctgtct
tctgtggaccgcgagacgagcccagagggcaaggacgatctgccattgcagacgcccccg
ccgtgggggctggacactgtgctcgctccatctgggaagactgccgaagccccctgcctg
cctggccagcctccgctcccctccccaccctccccggatgagctgcctgccagcgtcaag
caagcgtacaggacgtttgctgccgtgcccggcccagccctgccccaggatgaccttgtc
cagcccctcacgccagggcctgcagcccccccagagcagctgtccttccgcgagcggcag
aagtactttgagctggaggtccgggcacctccggcggaggggccccccaagcgtgtgtcc
ctggtgggcgccgatgacctgcggaagatgcaggaggaggaagcccgcaagctgcagcag
aagagggcgcagatgctgcgggatgcagcccaggtggggcgcacgccggaccccgatgac
aacggagagctcgaacccgaggagcccccctgggccggcccaggcctccctgcagggcct
ggccccgggtcccctcccctgcccggaggcagcgctcctgtcaggaccgccaaagccgag
cgccgccaccaggaacggctgcgcgtgcagagcccagaacctccagcacccccggagcct
gagcgggctctgtccccggcggagcgccgtgccctggaggccgagaagcgggccctgtgg
agggcggccaggatgaagtccctggagcaggacgcgctccgcgcccagatggtcctcagc
aagtcccaggacggcaggggcaagcgtgggcccctggagcgtctggcggagtccccctcc
cctgcgcccaccccgtcacccactcccttggaagatctcagctctcagaccagcagctcc
ccaggccgactggccttgtctgggaggaggtttgactacagggtctttgccgccctccct
tcctccaggcctctctgtggcatccagtccccaggtctgacagaggacatgaggtccttg
gaaccatctcccagtcccggcctgcagccggaggatggagaagtggccatggtgcttctg
ggcaggccctctgaggaggtggccctgtgcagcagccgccggcccgtgcggccagggcgc
cgcggcctgggcccagtgccctcctag
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integrated database retrieval system
