Sorex fumeus (smoky shrew): 130033975
Help
Entry
130033975 CDS
T10594
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03015
mRNA surveillance pathway
sfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130033975
09123 Folding, sorting and degradation
03018 RNA degradation
130033975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130033975
03041 Spliceosome [BR:
sfum03041
]
130033975
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130033975
mRNA cycle factors
Stress granule specific factors
130033975
Spliceosome [BR:
sfum03041
]
Complex C
Other components
Complex C specific factors
130033975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
ATP-grasp_2
YflT
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
130033975
NCBI-ProteinID:
XP_055981547
LinkDB
All DBs
Position
Unknown
AA seq
448 aa
AA seq
DB search
FTNVYIKDFGEDMDDERFKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
EMNGKELNEKQIYVGRPQKKVDRQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ
RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSAYFMAAIPQTQNRAAYYPPSQIP
QLRPSPRWTAQGARPHPFQKMPGAIRPAAPRPPFSTMRPASAQGPRVMSTQRVANTSTQT
MGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQHHLNAQPQVTMQQPAVHVQGQEPLTASM
LASAPPQQQKQMLVERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE
AVAVLQAHQAKEAAQKAVNSATTGVPTV
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
tttaccaatgtttacatcaaggattttggagaagacatggatgatgagcgctttaaggat
ctctttggcaagtttgggcctgccttaagtgtgaaagtaatgacggatgaaagtggaaaa
tccaaaggttttggatttgtaagcttcgaaaggcatgaagatgctcagaaggctgtggat
gagatgaatggaaaggagctcaatgaaaaacagatttatgttggtcgacctcagaaaaaa
gtggaccggcagacagagcttaagcgcaaatttgaacagatgaagcaggacaggatcacc
agataccagggtgttaacctttatgtgaaaaatcttgacgatggcattgatgatgaacgt
cttcggaaagagttttctccatttggtacaatcaccagtgcaaaggttatgatggagggt
ggtcgcagcaaagggtttggttttgtatgtttctcctccccagaagaagccactaaagca
gttacagaaatgaacggtagaattgtggccaccaagccattgtatgtagctttagctcag
cgcaaagaagagcgccaggctcacctgaccaaccagtacatgcagagaatggcgagtgtg
cgagccgtgcccaaccccgttatcaacccctaccagccagcacctccttcagcgtacttc
atggcagctatcccacagactcagaaccgtgctgcgtactatcctcctagccaaatccct
caactaagaccaagtccgcgctggactgctcagggtgccagacctcatccattccaaaag
atgcccggtgctatacgcccagccgctcctagaccgccatttagtacgatgagaccagct
tctgcccagggtccacgagtcatgtccacgcaacgtgttgctaacacatcaacacaaaca
atgggtcctcgtcctgcagctgcggctgctgccgcaactcctgctgtccgcaccgttcca
cagtataagtacgccgcaggtgtgcgcaaccctcagcatcatctgaacgcacagccacag
gtgaccatgcagcagcctgctgttcatgtacaaggccaggagcctttgactgcttccatg
ttggcatctgcccctcctcagcagcaaaagcaaatgttggttgaacggctctttcctctt
attcaggccatgcaccctactcttgctggtaaaatcactggcatgttgttggagattgat
aattcagaacttcttcatatgcttgagtctccggagtctcttcgttctaaagttgatgaa
gctgtagctgtactacaagcccaccaagctaaagaggctgcccagaaagccgtgaacagt
gccaccaccggtgttccaactgtttaa
DBGET
integrated database retrieval system
