Sorex fumeus (smoky shrew): 130034168
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Entry
130034168 CDS
T10594
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04151
PI3K-Akt signaling pathway
sfum04382
Cornified envelope formation
sfum04510
Focal adhesion
sfum04512
ECM-receptor interaction
sfum04820
Cytoskeleton in muscle cells
sfum04926
Relaxin signaling pathway
sfum04933
AGE-RAGE signaling pathway in diabetic complications
sfum04974
Protein digestion and absorption
sfum05146
Amoebiasis
sfum05165
Human papillomavirus infection
sfum05200
Pathways in cancer
sfum05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
130034168 (COL4A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130034168 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130034168 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130034168 (COL4A5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
130034168 (COL4A5)
09154 Digestive system
04974 Protein digestion and absorption
130034168 (COL4A5)
09158 Development and regeneration
04382 Cornified envelope formation
130034168 (COL4A5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
130034168 (COL4A5)
09162 Cancer: specific types
05222 Small cell lung cancer
130034168 (COL4A5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
130034168 (COL4A5)
09174 Infectious disease: parasitic
05146 Amoebiasis
130034168 (COL4A5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
130034168 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfum04147
]
130034168 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
sfum00536
]
130034168 (COL4A5)
Exosome [BR:
sfum04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130034168 (COL4A5)
Glycosaminoglycan binding proteins [BR:
sfum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130034168 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130034168
NCBI-ProteinID:
XP_055981685
LinkDB
All DBs
Position
Unknown
AA seq
1691 aa
AA seq
DB search
MKRRGVRLAAGFFLLALSLWGQPVEAAACYGCSAGSKCDCSGVKGEKGEKGFPGLEGHPG
LPGFPGPEGPPGPLGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGRPGFPGLQGPPGPPGIPGMKGEPGSVIMSSLPGPKGNTGYPGPPG
IQGPAGPTGIPGPMGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQIGEQKRTIDLEFQKGDQGLPGEQGPPGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGESGQPGIPGLPGDPGYPGEPGRNGEKGQKGDIGPTGPPGLVIPRPATGVNVGEKGS
IGLPGLPGEKGEKGFPGIQGPPGLPGPPGAAAMGPPGPPGLPGEKGQKGDEGLPGISIPG
SPGLDGQPGPPGLPGPPGPPGPPGPPSDEICQSGPPGPQGPPGDKGLRGEQGVKGDRGDT
CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGPKGEKGQAGTTGPKGLTGIPGAPGAPGF
PGSKGEPGDIYTYPGMKGDKGELGPPGSPGLPGLPGTPGQDGLPGLPGRKGEPGQIAFKG
ERGPPGNPGLPGLPGNMGPMGPLGIGPPGPVGEKGIKGMAGGPGQPGIPGQKGDPGQTIT
QPGKPGLPGNPGKDGEAGLPGEPGLPGQPGLPGLPGSKGEPGMPGIGLPGPPGPKGYPGI
PGPPGVPGIPGRSGVEGPPGLPGFPGPKGEPGVALPGQPGPPGLPGIKGTLGPKGDRGFP
GPPGPPGQTGLDGMPGSKGDIGANGQPGPMGPPGLPGIGVQGPPGPPGIPGPAGQPGLKG
IPGEKGDSGPPGFDVPGPPGEKGSPGIPGAPGPVGPPGSPGLPGKAGATGFPGAKGEMGV
MGPPGPPGPLGIPGRSGVPGLKGDNGFPGQPGLPGPAGEKGSKGEPGLPGPPGPMDPDLI
VSKGEKGDPGLPGFPGVSGPKGHPGLPGDPGQPGLSGEPGLPGPSGPKGEPGVPGHPGRM
GPPGLKGNMGEMGFPGPQGLKGSSGPPGVPGQPGSPGLTGQKGEKGDTGASGSRLPGLPG
PKGEPGLPGYPGNPGMKGSAGVTGLPGAKGEPGAKGQPGLPGFPGTPGLPGPKGINGPPG
NPGLPGEPGPVGGRGHPGQPGPIGEKGQPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGSPGPQGHP
GRPGPTGYQGQPGPEGPRGLPGNGGIKGEKGNPGQPGQPGLPGLKGDQGPPGLQGDPGRP
GLNGMKGDPGLPGVPGFPGLKGPTGVPGSTGPEGNPGPMGPPGPPGLPGPSGQSIIIKGD
SGPPGVPGQPGLKGPPGPPGPQGLPGPIGLPGDPGHNGLPGFDGAGGRKGDPGLPGQPGT
RGLDGPPGPDGLQGPPGPPGSSSFTHGFLITRHSQTTDAPPCPPGTVKIYDGFSLLYVQG
NKRAHGQDLGTAGSCLRRFSTMPFMFCNVNNICNFASRNDYSYWLSTPEPIPLSMEPLKG
QNIKPFISRCAVCEAPAMVIAVHSQTIQIPHCPQEWDSLWIGYSFMMHSSSGAEGSGQAL
ASPGSCLEEFRSSPFIECHGRGTCNYYANSYSFWLATVDISDMFSKPQSETLKAGDLRTR
ISRCQVCMKKT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggcgcggagtccgcctggccgcgggcttcttcctcctggccctgagcctttgg
gggcagccggtagaggctgcggcttgctatgggtgttctgcaggatcaaagtgtgactgt
agtggtgtaaaaggagaaaagggggagaaaggatttccaggattggaaggccatccaggt
ttgcctggatttccaggtcctgaaggtcctccagggcctctgggacaaaagggtgatgat
ggaattccaggaccaccaggaccaaaaggcattagaggtcctcctggacttcctggattt
ccagggacaccgggccttcctggaatgccaggccatgatggggccccaggacctcaaggt
atccctggttgcaatggaaccaagggagaacgtggatttcctggccgtcccggttttcct
ggtttacagggtcctccaggacctcctggtatcccaggcatgaagggagaaccaggtagt
gtaatcatgtcatcactaccaggaccaaagggtaatacgggatatccaggtcctcccgga
atacaaggtccagctggtcctactggtataccaggaccaatgggtcccccaggaccacca
ggtttaatgggtcctcctggtccaccaggacttcctggaccaaagggcaatatgggctta
aatttccagggacccaaaggtgaaaagggtgaacaaggtcttcaagggccccctggacca
cctgggcagatcggtgaacagaaaaggacaattgatctagagtttcagaaaggagatcag
ggactacccggtgagcaagggccccctggacctccaggaatacgtggtcctccaggtcct
ccagggggtgtgaagggtgagaaaggtgaacaaggagaaccaggcaaaagaggcaaacca
ggaaaagatggagagagtggtcagccaggaattccaggtttgccaggtgatcctggttac
cctggtgaaccaggaaggaatggagaaaagggccaaaaaggtgacattggtccaactggg
cctccaggacttgtaattcccaggcctgcaacaggtgtaaatgtaggagaaaaaggaagc
attgggttacctggcttgcctggagaaaaaggagaaaagggatttcctggtatacagggt
ccacctggtctgcctgggcctccaggagctgcagctatgggtcctcctggccctcctggc
ttgcctggagaaaagggccagaaaggtgatgaaggtctacctggaatttccattcctgga
tctcctggacttgatggacagcctggacctcctggccttcctggtcctcctgggcctcct
gggcctcctggtcctcctagtgatgagatttgtcagtcaggcccacctggtcctcaagga
cctccaggtgataaaggacttcgaggagaacaaggagtgaaaggtgacagaggtgacact
tgcttcaactgtattggaactggtatttctgggcctcctggtcaacctggtttgccaggt
cttccaggtcctccaggatctcttggtttccctggaccaaaaggtgaaaaggggcaagct
ggtacaactggtcccaaaggactaacaggaataccaggggctccaggggctccaggcttt
cctggatctaaaggtgaacctggtgacatctacacttacccaggaatgaagggtgacaaa
ggagagttgggtccccctggatctccaggacttcctggtttacctgggactcctggacag
gatggattgccaggacttcctggccgcaaaggagaacctggtcaaattgcttttaagggt
gaaagaggtccccctgggaacccaggtttgccaggtctcccagggaacatggggcctatg
ggccctcttggcattgggcctccaggcccagtaggtgaaaaaggcataaaaggtatggca
ggaggtccaggtcagccaggaattccaggtcaaaagggtgatccaggtcagaccataact
cagccagggaagcctggcctacctggtaacccaggtaaagatggtgaagcaggtcttcca
ggtgaacctggactcccaggacagccaggcttgccaggactacctggcagcaaaggagaa
ccaggcatgcctggaattggacttcctggacctccaggtcccaaaggttatcctggaatt
ccaggacccccaggagtacctgggatacctggaagaagtggtgtagaaggtcctcctggg
ctaccaggctttccaggtccaaagggagaaccaggagttgctttacctggacaaccagga
cctccaggactcccaggcatcaaaggaacacttggcccaaaaggggaccgaggtttccca
ggtcctccaggtcctccaggacaaactggcttggatggaatgcctggatctaaaggtgac
attggagcaaatggacaacctggaccaatgggacctcctgggctgccaggaataggtgtt
cagggaccaccaggaccaccaggtattcctggaccagcagggcagcctggcttaaaagga
ataccaggagagaagggggattcaggacctcctggatttgatgttccaggtccccctggt
gagaaaggcagtccagggatccctggagcacctggtcctgtgggacctccaggatcacca
gggctcccaggcaaagcaggtgccaccggttttccaggtgccaaaggtgaaatgggtgtt
atgggacctccaggcccaccaggacctttgggaattccaggaaggagtggtgttcctggt
cttaaaggtgataatggctttccggggcaaccaggacttcctggccctgcaggagaaaaa
ggtagtaaaggagagcctggccttccaggtccccctggaccaatggatccagatctgata
gtctcaaaaggagagaagggggaccctggtttacctggatttcctggagtttctgggcca
aaaggtcatcctggcttacctggagacccaggacaacctggattaagtggggagcctgga
ttaccaggaccctcaggtcctaagggtgaacctggtgtcccagggcatccaggacgtatg
ggacctcctggacttaaaggaaacatgggtgagatggggtttccaggacctcagggtctg
aaaggatcatctggacctcctggtgttcctggacaacctggctccccaggactaacagga
cagaaaggagaaaaaggtgatacaggtgcttctggcagtcgtcttccaggtctgcctggc
ccaaagggtgaacctggtctgcctggatatccaggtaaccctggtatgaaaggttctgca
ggagttactggtttgcctggagcaaaaggagaacctggagcaaaggggcaaccaggcctt
cctggattccctggaaccccaggccttcctggaccaaagggtattaatggtcctcctggg
aatcctggccttcctggagaacctggtcctgtaggtggcagaggtcatcctgggcaacca
gggcctataggtgaaaaaggccaaccaggtcaagatggtattcctgggccagctggacag
aaaggtgaaccaggtcaaccaggctttggaatcccaggaccccctggacttccaggactc
tctggtcaaaagggtgatggaggattacctggaataccaggaaatcctggccttccaggc
ccaaagggtgaaccaggctttcatggtttccctggtgtacagggtcccccaggccctcct
ggttctccaggcccagctctggaaggcccaaaaggcagtccaggtccccaaggtcatcct
gggagaccaggtcctacaggttatcaaggtcaaccagggccagaaggtcctcgtggtctc
cctggaaatggaggtattaagggagagaaaggaaacccaggccaacctgggcaacctggt
ttgcctggattgaaaggagatcaaggaccaccaggactccagggtgatcctggtcgtcca
ggtcttaatggaatgaaaggagatccaggtctccctggtgtaccaggattcccaggcctg
aaaggacccactggagtacctggttcaactggccctgaaggaaatcctggacctatgggg
cctcctggtccccctggattacctggtccttccggacaaagtattataatcaaaggagac
tctggtccaccaggagtcccaggccaacctggattaaaaggtccaccaggcccaccagga
cctcaaggattaccaggtccaattggccttccaggagaccctggacacaatgggctccct
ggatttgatggagcgggaggacgcaaaggagacccaggtctgcctggccaaccaggtacc
cgtggtttggatggtcctcctgggccagatggattacaaggccctccaggtccacctgga
tcctcatctttcacccatggattcctcatcacacgtcacagtcagacaacagatgcacct
ccatgcccaccaggaactgtcaagatttatgatggcttttctcttctatatgtacaggga
aataaaagagctcatggccaagatttggggacagctggcagctgccttcgtcgcttcagt
accatgcctttcatgttctgcaatgtcaataatatttgcaattttgcttcaagaaatgac
tattcttactggctctccaccccagagcccatacctttgagcatggagcccttgaaagga
cagaacattaagccatttattagtcgatgtgcagtatgtgaagctccagccatggtcatt
gcagtccatagtcagaccatccaaattccccattgtccacaggaatgggattctctctgg
attggttattccttcatgatgcactcaagttcaggagcagaaggttcaggtcaagctctg
gcctcccctggctcttgcttggaagagtttcgttcatctcccttcattgaatgtcatggg
agaggtacctgcaactactatgccaactcctacagcttttggttagcaactgtggatatt
tcagacatgtttagcaagcctcagtcagaaacgctgaaagcaggagacttgagaacacgc
attagccgatgtcaagtgtgtatgaaaaagacataa
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