Sorex fumeus (smoky shrew): 130034930
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Entry
130034930 CDS
T10594
Symbol
MED13
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04919
Thyroid hormone signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09152 Endocrine system
04919 Thyroid hormone signaling pathway
130034930 (MED13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130034930 (MED13)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
130034930 (MED13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Motif
Other DBs
NCBI-GeneID:
130034930
NCBI-ProteinID:
XP_055982417
LinkDB
All DBs
Position
Unknown
AA seq
2172 aa
AA seq
DB search
MSSSFVPNGASLEDCHCNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILSSFSRC
LKADVLGVWRRDQRPGRRELWIFWWGEDPNFADLIHHDLSEEEDGVWENGLSYECRTLLF
KAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKSEHLSCSFTFFLHGDSNVCTSVEI
NQHQPVYLLSEEHITLAQQSNSPFQVILSPFGLNGTLTGQAFKMSDSATKKLIGEWKQFY
PISSCLKEMSEEKQEDMDWEDDSLAAVEVLVAGVRMIYPACFVLVPQSDIPPPSSVGSSH
CSASCLGVHQVPASTRDPAMSSVTLTPPTSPEEVQTVDPQSAQKWVKFSSSSDGFSSDST
SHHGGKIPRKLANHVVDRVWQECNMNRTQNKRKYSASSSGLCEEEIADKVACWDFVEATQ
RTTCSCLRHKTLKPRNPGQQGQAPLLNQQQQVLPKHKTNEKQEKSEKPQKRPLTPFHHRV
SISDDVGMDTDSTSQRLVISASDSQVRFSNIRTNDIAKTPQMHGTEMSNSPQPPPLSPHP
CDVVDEGVTKTPSTPQSQHFYQMPTPDPLVPSKPMEDRIDSLSHSFPTQFQETVEPTIYV
GTAVNLEEDETNRAWKYYKVPKKKDVEFLPPQLPSDKFKDDPVGPFGQESVTSVTELMVQ
FKKPLKVSDELVQQYQIKNQYLSAITSGAEQEPKIDPYAFVEGDEEFLFPDKKDRQNSER
ETGKKHKVEDGPSNITVLSHEEDAMSLFSPSIKQGAPRPAGHARPPSTSLIYVSDLTVSY
TDLDNLFNSDEDELTPGSKKSANGSDDKSTCKESKAGNLDPLSCISTADLHKMYPTPPSL
EQHIMGFSPMNMNNKEYGSMDTTPGGTVLEGNSSSIGAQFKIEVDEGFCSPKPFEVKDFS
YVYKPENCQVLVGCSMFAPLKTLPSQCLPPIKLPEECIYRQSWTVGKLELLSSGPAMSFK
EGDGSTMDQEYGPAYTPQTHTSFGMPPSSAPPSNSGAGILPSPSTPRFPTPRTPRTPRTP
RGAGGPASAQGSVKYENSDLYSPASTPSTCRPLNSVEPATVPSIPEAHSLYVNLILSESV
MNLFKDCNFDSCCICVCNMNIKGADVGVYIPDPTQEAQYRCTCGFSAVMNRKFGNNSGLF
LEDELDIIGRNTDCGKEAEKRFEALRATSTEHVNGGLKDSEKLPDELILLLQDQCTNLFS
PFGAADQDPFPKIGLTSNWVRVEERDCCNDCYLALEHGRQFMDNMSGGKVDEALVKSSCL
HPWSKRNDVSMQCSQDILRMLLSLQPVLQDAIQKKRTVRPWGVQGPLTWQQFHKMAGRGS
YGTDESPEPLPIPTFLLGYDYDFLVLSPFALPYWERLMLEPYGSQRDIAYVVLCPENEAL
LNGAKSFFRDLTAIYESCRLGQHRPISRLLSDGIMRVGSTASKKLSEKLVAEWFSQAADG
NNEAFSKLKLYAQVCRYDLGPYLASQPLDSSLLSQPNLVAPTSQSLITPPQVTNTGNANT
PSATLASAASSTMTMTSGVAMSSSVATANSTLTTASTSSSSSSNLNSGISSNKLPSFPPF
GSMNSSAPGSMSTPSTVQNGQLGGQQSSVLQTSGISGDSSSLPTQAHPDVSESTMDRDKV
GIPTDGDSHAITYPPAIVVYIIDPFTYESKDESTNSSNVWTLGLLRCFLEMVQTLPPHIK
STVSVQIVPCQYLLQPVKHEDRHIYTQHLKSLAFSVFTQCRRPLPTSTNVKTLTGFGPGL
ALETALKSPDRPECIRLYTPPFILAPVKDKQTELGETFGEAGQKYNVLFVGYCLSHDQRW
ILASCTDLYGELLETCIINIDVPNRARRKKGSARRFGLQKLWEWCLGLVQMSSVPWRVVI
GRLGRIGHGELKDWSCLLSRRNLQSLSKRLKDMCRMCGISAADSPSILSACLVAMEPQGS
FVIMPDSVSTGSVFGRSTTLNMQTSQLNTPQDTSCTHILVFPTSASVQVASATYTTENLD
IAFNPGNDGENGMVIFDLLDTGDDIDPDLISILPASPTGSPVHSPGSHYPHGGDAGKGQG
TDRLLSTESHDEVTNILQQPLALGYFVSTAKAGPLPDWFWSACPQAQYQCPLFLKASLHL
HVPSVQSDELLHSKHSHPLDSNQTSDVLRFVLEQYNALSWLTCDPATQDRRSCLPIHFVV
LNQLYNFIMNML
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atgagttcctccttcgtgccgaacggggccagtctggaagattgtcactgtaacctcttc
tgcctggctgacttgactggaattaaatggaaaagatatgtgtggcaaggcccaacttct
gcccctattctatttccggtgacagaggaagaccccattttgagcagttttagtcgctgc
cttaaggcagatgtacttggtgtttggcgacgagatcaaagacctggaagaagagaattg
tggatattttggtggggtgaagaccctaattttgctgaccttattcaccatgacttatca
gaagaggaagatggagtatgggagaatggactttcctatgaatgccgtactctgcttttc
aaagcagttcacaatctgttggaacggtgtttaatgaatcggaattttgtacggattggc
aagtggtttgtaaagccttatgaaaaagatgaaaaacctataaataaaagtgaacacttg
tcctgctcattcacctttttcttgcatggagacagcaatgtttgtaccagcgtggaaatt
aaccaacatcaacctgtataccttcttagtgaagaacatattacccttgctcaacagtca
aatagcccatttcaagttatcttaagcccatttggactaaatggaactctcacaggacag
gcattcaagatgtctgattcagctacaaaaaaattgataggtgaatggaaacagttctat
cccatctcttcctgcttgaaggagatgtctgaagaaaaacaagaagatatggattgggaa
gatgattctttagctgcagtagaagttcttgttgctggtgttcgaatgatctacccagca
tgctttgttttagtccctcagtcagacattcctcctcctagctctgtgggatcctctcac
tgttcagcttcttgcttgggtgtccaccaagtgcctgcttccacaagagatcctgctatg
tcttcagttactcttacaccacctacatctcctgaggaagttcagacagttgatcctcag
tctgctcagaagtgggtcaaattttcttcatcatctgatggcttcagctctgatagtact
agccaccatggtgggaaaatacccagaaaattagcaaatcacgtggtggatagagtttgg
caagaatgcaatatgaacagaacacagaacaagaggaagtattcagcttcatcaagtggt
ctgtgtgaagaagagatagctgataaagtagcctgctgggattttgttgaagccacacag
agaacaacttgcagctgcttgaggcacaaaactctgaaaccaagaaatcctgggcaacag
ggacaggcaccattgttaaatcagcaacaacaagtacttcctaagcacaagaccaatgaa
aaacaagaaaagagtgaaaaaccacagaaacgtcccttgactccttttcaccatcgagta
tctattagtgatgatgttggcatggacacagattcaactagccaaagactcgtgatttct
gcttcagacagtcaagtgagattttcaaacatccgaactaatgatatagcaaagactcct
cagatgcatggcactgaaatgtcaaattcacctcaaccgcccccacttagtcctcacccc
tgtgatgttgttgatgaaggagtgactaaaacaccttcaactcctcagagtcaacatttt
tatcaaatgccaacaccagatcccttggttccttctaaaccaatggaagataggatagac
agtttatcccactctttcccaactcaatttcaggaaactgtagaacctacaatatatgtt
ggtacagcagtaaacttggaagaagatgaaactaatagagcctggaagtattacaaggtc
ccaaagaaaaaagatgttgagtttttacctcctcagcttccaagtgataaattcaaggat
gacccagttggaccttttggacaggaaagtgtaacatcagttacagagttaatggtgcaa
tttaagaaacctttaaaagtttctgatgaattagtgcagcaatatcaaattaaaaatcag
tatctttcagcaataacatctggtgcagaacaagagcctaaaattgatccttatgcattt
gttgaaggagatgaagaatttctttttcctgataagaaagatagacaaaatagtgagaga
gaaactgggaaaaaacataaggtagaagatggtccatctaatataacagtgttatcccat
gaagaagatgctatgtcactatttagtccctctataaagcaaggtgctccacgccctgcc
ggtcatgctcgtcctccatcaaccagtttgatatatgtttcagatttgactgtctcttat
actgacctagataatctcttcaattctgatgaagatgaattaacacctggatctaaaaaa
tcagcaaatggatccgatgataaatccacctgcaaggaatcaaaggcaggaaatctggac
ccattatcttgtataagcactgcagatcttcataaaatgtatcctacaccaccatcatta
gaacaacatatcatgggattttctccaatgaatatgaataataaagaatatggtagtatg
gatacaacacctggaggaactgttctagaaggaaatagttctagtataggagcacagttc
aaaattgaggttgatgaaggattctgtagccccaaaccttttgaagttaaagatttttct
tatgtctataagcctgaaaattgtcaagttctagttggatgttccatgtttgcacctcta
aaaactctaccaagccaatgtttgcctcctatcaaattgccagaagagtgtatttatcgt
cagagttggactgttggaaaattggaattgctttcttcagggcctgcaatgtcattcaaa
gagggtgatggaagtactatggatcaagaatatggccctgcttatacacctcaaactcat
acttcttttgggatgcctcctagcagtgcacctcctagtaatagtggagctggaattctt
ccttctccatctactcctaggtttccaactccaaggactcctcggactcctcggactcct
cgtggagctggtggacctgctagtgctcaaggttcagtcaaatatgaaaattcagactta
tattcaccagcttccaccccatctacatgcagaccacttaattctgttgaacctgcaact
gttccttccatacctgaagcacatagtctttatgtaaacctcattctttcagaatcagta
atgaatttatttaaagactgtaactttgatagttgctgtatctgtgtctgcaacatgaat
atcaagggtgccgatgttggagtttacattccagatcccacgcaggaagctcaatatagg
tgcacctgcggcttcagtgctgtcatgaacagaaaatttggaaacaattcaggattattt
cttgaagatgaactagatattataggacgcaacacagattgtggcaaagaagcagaaaag
cgttttgaagctctcagggctacttctactgaacatgttaatggaggactaaaggattct
gaaaaattgcctgatgagttgatactattgctgcaagatcagtgtactaatttattttca
ccctttggagcagcagaccaagatcctttccccaaaattggtttaactagcaactgggta
cgggttgaagagagagactgttgcaatgattgctaccttgctttagaacatgggcgtcaa
tttatggataacatgtcaggaggaaaagttgatgaagcactcgtgaaaagttcatgctta
catccctggtctaaaagaaatgatgtgagtatgcagtgctcacaggatatacttcgaatg
ctcctatctcttcagccagttcttcaggatgctattcagaaaaaaagaacagtaaggcct
tggggtgttcaaggtcctctcacttggcagcagtttcataaaatggctggccgaggatct
tatggaactgatgaatccccagaaccactgccaatccccacgtttttgttgggttatgat
tatgattttctggtgctttctccttttgctctcccttactgggagagattgatgctggaa
ccttatggatctcaaagagatattgcctatgttgtactatgtccagaaaatgaagctttg
ttaaatggagccaaaagcttttttagagatctaactgcaatatatgaatcctgtcgattg
ggtcaacatagacctatttctcgactgttatcagacggaatcatgagagttggatctact
gcatcaaagaaactttcagaaaagttggtagcagaatggttttctcaggcagctgatggt
aacaatgaagcattttctaaactcaagctttatgcacaagtctgcagatatgacctaggt
ccttatcttgcttctcagccattggacagctctctactttcccagccaaatttagttgcc
cctacaagtcagtctttgataactccaccacaggtgacaaatactggaaatgctaatact
ccatctgctaccctagcatctgcagcaagcagcactatgacaatgacttcaggtgttgcc
atgtcgtcttcagttgccacagccaattcaactttgaccacagcttcaacttcatcttca
tcatcttccaacttgaatagtggaatatcatcaaataaactaccttcatttccacccttt
ggcagtatgaacagtagtgctccaggatccatgtctactccgagcacagttcagaatggt
cagctgggagggcaacagtcatcagttctacaaacatctggaatttctggagattcatct
tcacttcccacacaggcacatccagatgtgtctgaaagcaccatggatcgggataaagtg
ggcatccctacagatggtgattcacatgcaatcacctatccacctgcaattgttgtttat
ataattgatccttttacatatgaaagtaaagatgagagcactaattcatctaatgtatgg
actttggggctacttcgttgctttttggaaatggttcagactcttcctcctcatatcaag
agtactgtttctgtacagattgttccttgtcagtacctcttgcaacctgtgaagcatgaa
gatagacacatctatacccagcatttaaaatccttagctttctcagtcttcactcagtgt
cgaagaccactcccaacatcaaccaatgtgaaaacgttgactggctttggtccaggttta
gccttggaaactgctctgaaaagtcctgatagaccagagtgtattcgactttatacacct
ccttttattctggctccagtgaaggataaacagacagagctaggagaaacatttggagaa
gctggacagaaatataatgttctttttgtgggctactgtttatcacatgatcaaagatgg
attctggcatcttgcacagacctttatggagaacttttagaaacttgtatcattaacatc
gatgttccaaatagggctcgtcggaaaaaaggttctgctaggagatttggtctacagaaa
ctttgggagtggtgcttaggactggtacaaatgagttcagtaccatggagagttgtaatt
ggccgtttaggaaggattggtcatggagaactaaaagattggagctgtttgctgagtcgt
cgaaacttgcagtctctaagtaaaaggctcaaagacatgtgtagaatgtgtggtatatct
gctgcagattctcctagcattctcagtgcttgcttggtagcaatggaaccccaaggctct
tttgttattatgccagattctgtctcaactggttctgtgtttggaagaagtaccacttta
aacatgcagacatctcagttaaatactccacaggatacatcatgtactcatatacttgta
tttcctacttctgcttcagtacaagtagcatcagctacttataccactgaaaatttagat
atagctttcaatcctggcaacgatggagaaaatggaatggttatctttgatttattagac
acaggagatgatattgaccctgatctcattagtattcttcctgcatctcctactgggtct
cctgtacattctccaggatctcattaccctcatggaggcgatgctggcaagggtcagggt
actgatcggctactttcaacagaatctcatgatgaagtaactaatattcttcagcaacca
ttggccctcggttactttgtatcaactgccaaagcgggtcctttacctgactggttctgg
tcagcatgtcctcaagcacaatatcagtgtcctctttttcttaaggcctctttgcacctc
cacgtgccttcagtgcaatctgatgagctgcttcacagtaaacactcccacccacttgac
tcaaatcagacttcagatgtcctcaggtttgttttggaacagtacaatgcactctcctgg
ctaacctgtgaccctgcaacccaggacagacgctcatgtctcccaattcattttgtggtg
ctgaatcagttatataactttatcatgaatatgctgtga
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