Sorex fumeus (smoky shrew): 130035198 Help Entry 130035198         CDS       T10594                                  Symbol COL1A1 Name (RefSeq) collagen alpha-1(I) chain   KO K06236   collagen type I alpha Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04151   PI3K-Akt signaling pathway sfum04510   Focal adhesion sfum04512   ECM-receptor interaction sfum04518   Integrin signaling sfum04611   Platelet activation sfum04820   Cytoskeleton in muscle cells sfum04926   Relaxin signaling pathway sfum04933   AGE-RAGE signaling pathway in diabetic complications sfum04974   Protein digestion and absorption sfum05146   Amoebiasis sfum05165   Human papillomavirus infection sfum05205   Proteoglycans in cancer sfum05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:sfum00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     130035198 (COL1A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     130035198 (COL1A1)    04518 Integrin signaling     130035198 (COL1A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     130035198 (COL1A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     130035198 (COL1A1)  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     130035198 (COL1A1)   09152 Endocrine system    04926 Relaxin signaling pathway     130035198 (COL1A1)   09154 Digestive system    04974 Protein digestion and absorption     130035198 (COL1A1)  09160 Human Diseases   09161 Cancer: overview    05205 Proteoglycans in cancer     130035198 (COL1A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     130035198 (COL1A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     130035198 (COL1A1)   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     130035198 (COL1A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     130035198 (COL1A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sfum00536]     130035198 (COL1A1) Glycosaminoglycan binding proteins [BR:sfum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130035198 (COL1A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  130035198 NCBI-ProteinID:  XP_055982736 LinkDB All DBs Position Unknown AA seq 1460 aa AA seqDB search MFSFVDLRLLLLLAATALQTHGQEEGQEEDIPPVTCIQNGLRYHDRDVWKPEPCRICVCD NGNVLCDDVMCDDTKNCPGAQVPPGECCPVCPDGEVSPTDQESAGAEGPKGDTGPRGPRG PVGAPGRDGIPGQPGLPGPPGPPGPPGPAGLGGNFAPQMSYGYDEKSTGGISVPGPMGPS GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGER GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDSGPAGPKGEPGSPGENGAPGQMGPR GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSE GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPS GPPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPTGLPGPP GERGGPGGRGFPGADGAAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP GAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGAP GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQGAP GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGES GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA GPTGAPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKE GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLP GQRGERGFPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSP GRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPAGAR GPAGPQGPRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP GSAGAAGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPSSGGFDFSFMPQP PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKM CHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKEKRHV WFGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNLTYHCKNSVAYMDQQTGNL KKALLLQGSNEIEIRAEGNSRFTYSVPYDGCTSHTGAWGKTIIEYKTTKTSRLPIIDVAP LDVGAPDQEFGFDISPVCFL NT seq 4383 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctccagacg cacggccaagaggagggccaagaagaagacatcccgccagtcacctgcatacagaacggc ctcaggtaccatgaccgggacgtgtggaaacccgagccctgccggatctgtgtctgcgac aacggcaacgtgctgtgcgatgatgtgatgtgcgacgacaccaagaactgtcctggcgcc caagtgccccctggcgagtgctgccccgtctgccccgacggcgaggtgtcaccgacggac caagaaagcgccggagccgagggacccaaaggagacactggcccccgcggccccagggga cccgttggcgcccctggccgagatggtatccctggacagcctggactgcctggaccccca ggccctcctggacccccaggacctgccggccttggaggaaactttgctccccagatgtct tacggctatgatgagaaatccactggaggaatttccgtgcctggccccatgggtccttct ggcccccgaggtctccctggccctcctggtgcacctggtccccaaggtttccaaggtccc cctggtgagcccggcgagcctggagcctccggtcccatgggtccccgtggtcctgctggc ccccctggcaagaatggagatgatggtgaagctggcaagcctggtcgccccggtgagcgt ggccctcctggacctcagggtgctcggggattgcccggaactgctggtctccctggaatg aagggacacagagggttcagcggtctggatggtgccaaaggagactctggccctgctggc cccaagggtgagcctggaagccctggtgaaaacggagcccctggtcagatgggtccccgc ggtctgcctggcgagagaggtcgtcctggagcccctggccctgctggtgctcgtggaaat gatggtgctactggtgctgctggacccccgggtcccactggccccgccggacctcctgga ttccctggtgctgtgggtgctaagggtgaagctggtccccaaggagcccgaggctctgaa ggtccccagggtgtgcgtggagagcccggcccccctggccctgctggcgccgcaggccct gctggaaaccctggtgctgacggacaacccggtgccaagggcgccaatggcgctcccggt attgctggtgctcctggcttccctggcgcccgaggcccctccggaccccagggccccagc ggcccccctggtcccaagggtaacagtggcgaacctggtgctcccggcaacaaaggcgac accggtgccaagggagagcccggccctgctggtgttcaaggcccccctggtcccgctggg gaagaaggaaaacgaggcgcccgaggtgaacccggacccactggccttcccggaccccct ggcgagcgtggtggacctggtggccgtgggttccctggtgctgatggtgctgctggcccc aagggtcctgctggagaacgtggctctcccggccctgctggccccaaagggtctcctggt gaagctggtcgtcctggtgaggctggtctgcccggtgccaagggtctgactggaagccca ggaagcccaggtcctgatggcaaaactggcccccctggtcccgctggacaagatggtcgt cccggcccccctggcccccctggtgcccgtggtcaggctggtgtgatgggattccctgga cctaaaggtgctgctggagaacctggcaaagctggagaacgaggcgtccctggaccccct ggcgctgtgggtcctgctggcaaagacggagaggccggagctcagggcgcccccggccct gctggccctgctggtgagcgaggagaacaaggccccgctgggtcccccggattccagggt ctccccggccccgctggtccccccggtgaagcaggcaaacccggtgaacagggtgctcct ggagacctgggtgcccccggcccctctggagccagaggcgagcgtggtttccccggagag cgtggagtgcaaggcccccccggccccgccggcccccgcgggtccaacggtgctcccggc aacgatggtgctaagggcgacgctggagctcctggagcccccggcagccagggcgcccct ggccttcagggcatgcccggggaacggggtgcagctggccttccaggacccaagggtgac agaggtgatgctggtcccaaaggtgctgacggttctcctggcaaagacggtgtccgtggt ctgactggccccattggtcctcctggccctgctggtgcccctggtgataagggtgaaagt ggacccagtggtcctgctggtcccaccggagctcgcggtgcccctggagaccgtggagag cctggtccccccggccctgctggctttgctggccccccaggtgctgatggccagcctggt gctaaaggcgaacccggagatgctggtgctaaaggcgacgccggaccccccggccccgct ggccccactggagcccctggccccattggtaatgttggtgctcccggacccaaaggtgct cgcggcagcgccggtccccctggtgctactggtttccctggtgctgctggccgtgttggt ccccccggcccctctggaaacgccggtccccctggtccccctggccctgttggcaaggaa ggaggcaaaggcccccgtggtgagactggccccgccgggcgtcccggtgaagtcggcccc ccaggcccccccggccctgctggcgagaaaggctctcccggtgctgatggtcccgctggc tctcccggcacccccgggcctcagggcattgctggacagcgtggtgtggtgggcctgccc ggccagcgaggagaacgaggcttccctggacttcctggtccctctggtgaacctggcaag caaggtccttccggatcaagtggggaacgcggcccccctggtcccatgggcccccctgga ttggctggacctcctggcgagtctggacgtgagggatctcctggtgctgaaggctccccc ggacgagatggatctcctggccccaagggtgaccgtggtgagacaggccccgctggaccc cctggcgcccctggtgctcctggtgcccccggccccgtaggtccagctggcaaaagtggc gatcgtggagagacgggtcctgctggtcctgccggccccatcggtcctgctggtgcccgt ggccccgctggaccccaaggtcctcgtggtgacaagggtgagaccggcgagcagggtgac agaggcatgaaaggccaccgcggtttctctgggctccagggtccacctggtcctcccggc tctcctggtgaacaaggtccctccggagcttctggtcctgctggtccccgaggtccccct ggatctgctggtgctgctggcaaagacggactcaacggtctccctggccccatcggtccc cctggtccccgtggtcgcactggtgatgctggtcctgttggtccccccggcccccctggc cccccaggcccacctggtccttccagcggtggcttcgacttcagcttcatgccacagcca cctcaggagaaggcccacgacggcggccgctactaccgggccgacgacgccaacgtggtc cgcgaccgtgacctcgaggtagacaccaccctcaagagcctgagccagcagatcgagaac atccggagcccagaaggcagccgcaagaaccccgcccgcacctgccgcgacctcaagatg tgccactcggactggaagagcggagaatactggatcgaccccaaccaaggctgcaacctc gatgccatcaaggtcttctgcaacatggaaacaggcgagacctgcgtgtaccccacccag cccagcgtggcccagaagaactggtacatcagcaagaaccccaaggagaagagacacgtg tggttcggcgagagcatgaccgatggcttccagttcgaatacggcggcgagggctccgac cccgccgacgtggctatccagctgacgttcctgcgcctgatgtccaccgaggcctcccag aacctcacctaccactgcaagaacagcgtggcctacatggaccagcagaccggcaacctc aagaaggccctgctcctccagggctccaacgagatcgagatccgggccgagggcaacagc cgcttcacctacagcgtcccctacgacggctgcacgagtcacacgggagcctggggcaag accataatcgagtacaaaaccaccaagacctcccgcctgcccatcatcgacgtggctccc ttggacgttggcgccccagaccaggaattcggcttcgacatcagccccgtctgcttcctg taa

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