Sorex fumeus (smoky shrew): 130035457
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Entry
130035457 CDS
T10594
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03013
Nucleocytoplasmic transport
sfum03015
mRNA surveillance pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130035457 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
130035457 (DDX39B)
03015 mRNA surveillance pathway
130035457 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130035457 (DDX39B)
03041 Spliceosome [BR:
sfum03041
]
130035457 (DDX39B)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130035457 (DDX39B)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130035457 (DDX39B)
Spliceosome [BR:
sfum03041
]
Complex C
Other components
EJC/TREX
130035457 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130035457 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130035457
NCBI-ProteinID:
XP_055983153
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaacgagctcttggactatgaagaggatgaggtggagacc
gcagcggggggagatggaactgaggcccctgccaagaaggacgtcaagggttcctacgtc
tccatccacagctctggtttccgggacttcctgctcaaaccagagttactccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgtatcccgcaggccatt
ctgggcatggatgtcctgtgccaggccaagtccggcatgggaaagacagcggtgtttgtg
ctagccacattgcaacagctggagccagtcactgggcaggtgtctgtgctggtgatgtgt
cacactcgagagttggcatttcagataagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcagtgttttttggtggtctttctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtgggaactccaggccgcatcctagccttggct
cgaaataagagcctcaacctcaaacacatcaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgcccagtgtgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcaacgctgc
attgccctggcccagctcctggtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaagaaaggctatctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggcaaccaacctgtttggtcgaggcatggatattgagcgggtgaatatcgccttt
aactatgacatgcctgaggattcagatacctacctgcatcgggtggccagagctggcagg
tttggtactaagggtttggccatcacgtttgtgtcagatgaaaacgatgccaagatcctc
aatgatgtgcaggatcgatttgaggtcaatatcagtgaactgcctgatgagattgacatc
tcctcctatattgaacagacgcggtag
DBGET
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