Sorex fumeus (smoky shrew): 130035573
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Entry
130035573 CDS
T10594
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130035573 (DHX8)
Spliceosome [BR:
sfum03041
]
Complex C
Other components
Step II factors
130035573 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
130035573
NCBI-ProteinID:
XP_055983323
LinkDB
All DBs
Position
Unknown
AA seq
1228 aa
AA seq
DB search
MAVAVALAGAAIGAELGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKSSLVKNGAEFTDSLISNLLRLIQTMRPPAKPSTGKDLVVKPKTEKEKLKELFP
VLCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGQEKPRDAEHRDKIKRKKRSRSR
SRSRERERDRERERDRDRDRERDRDRSRDHKRRHRSRSRTRDRNKGKSRYRSRSRSQSPL
KDRKDRDKYGERNLDRWRDKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWE
GLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNRRR
NLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLS
KEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSL
SQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMP
NDIPEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGS
GKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCT
SPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMK
LIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEP
PGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGS
RKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAG
RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME
TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSML
SVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSL
RRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQV
VYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQ
KKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggccgtggcgctggcgggagccgccatcggagcagaactgggccccgcggaa
gaactcgccaaactcgagtatctgtctttggtgtcgaaggtctgcaccgagttggacaat
cacttggggatcaacgataaggacctggctgaatttgttatcagtcttgctgagaaaaac
accacctttgacacctttaaatcttctctcgtcaaaaatggtgcagaatttacggattct
ctcattagtaatttactgcgtctcatccagaccatgcggcctccagcaaagccttccact
ggcaaagatcttgttgttaaacccaaaactgagaaggagaagctgaaggaactcttccca
gtcttgtgccaaccagataacccttctgttcggaccatgctggacgaggatgacgtgaaa
gtagctgtggatgttctgaaagaactggaggctttgatgcccagcgcagcaggccaggag
aagccgagagacgccgagcaccgagacaagattaaaaggaagaaacggagccgaagcagg
agccggagccgagagcgagagcgagacagggagcgggagcgggacagagaccgagacaga
gagcgcgaccgagaccgcagtcgcgaccacaagcgaagacaccgctcccgctcccggacc
cgggacaggaataaagggaagtctaggtaccgctccagaagtagaagtcagagtcccctc
aaagaccggaaggaccgagacaagtatggggagagaaatctggacagatggcgggataag
catgtggaccgccctccccctgaagagccggccatcggggacatctacaacggcaaagtc
accagcatcatgcagtttggctgctttgtgcagctggagggcctgaggaagcggtgggaa
ggcttggtgcacatctcagagctccggcgagagggccgcgtggccaacgtggctgatgtg
gtgagcaaaggacagagggtcaaggtcaaggtgctgtccttcaccgggaccaagaccagt
ctgagcatgaaggatgtagatcaagagacgggagaagatctcaacccgaaccggcgacgg
aaccttgttggggagaccaatgaggagacctccatgcggaacccagacagacctacgcac
ctgtccctcgtcagcgcccctgaggttgaggatgactcgttggagcggaagcgcctcacc
cgaatctctgaccccgagaaatgggagatcaagcagatgatcgcggccaatgtcctttcc
aaagaagaattcccagacttcgatgaagagaccggcattctcccgaaagtagatgacgaa
gaagatgaggaccttgagattgaactggttgaggaagagccgccattcctgcggggacac
accaagcagagcatggacatgagccctataaaaatcgtgaagaacccagatggctccctc
tcccaagcagcgatgatgcagagtgccctggccaaggagaggcgggaactcaagcaggcc
cagcgggaagcagagatggattctatccccatggggctcaacaagcactgggtcgatcct
ctgcctgatgcggaaggccggcagatagcagccaacatgaggggtattgggatgatgccc
aatgacattccagagtggaagaagcatgcctttgggggcaacaaagcttcttatggaaaa
aagactcagatgtcaattctggagcagagagagagcttgcctatctacaaactgaaggag
cagctggtccaggctgtgcatgacaatcagatcctgatagttatcggagagacaggatct
gggaagacaacgcagatcacccaatacctggcggaggcgggctacacttccaggggcaag
attgggtgcacccagcccagaagagtggcagccatgtcggtggccaaaagagtgtcggaa
gagtttggttgttgcttaggccaagaggtgggctacaccatccggtttgaggactgcacc
agccccgagacagtcatcaagtacatgacggacgggatgctgctccgagagtgcctgatc
gaccctgacctcacgcagtacgccattatcatgctggatgaggcgcacgagcgtaccatc
cacacagatgtgctctttggcttgttgaaaaaaaccgttcagaagcggcaggacatgaag
ctgattgtcacttcggccaccttggatgcagtgaagttctcccagtacttctacgaagct
cccattttcaccatcccaggtcgaacgtaccccgtggagatcctgtacaccaaggagccc
gagacagactacctggatgccagcctgatcactgtcatgcagatccatttaacggaacca
ccaggtgacatcctggtttttctgactggtcaggaagagatcgataccgcatgtgagata
ctgtacgaaagaatgaaatcgctggggcctgatgtaccggagctgatcatcctgcccgtg
tactcggccctgcccagtgagatgcagacccgcatcttcgacccagctcctcctggcagc
agaaaggtggtgatcgccaccaacattgcggagacttcgctgactattgatggcatctac
tacgtagtggacccaggtttcgtgaagcagaaagtttacaattccaaaacaggaatagac
cagctggttgtgactcccatttctcaggcgcaggccaagcagcgcgccggcagagccggg
agaacaggcccagggaagtgctaccggctgtacacggaacgcgcctaccgggacgagatg
ctgaccaccaacgtgccggaaatccagagaactaacttggcaagcacggtgctgtcgctc
aaggccatgggcatcaatgacctgctgtcctttgacttcatggatgcaccgccaatggag
acactgatcacggccatggagcagctgtacacactgggggccctggacgacgaaggcctg
ctcacccgcctgggccgcaggatggcagaattccccctggagccaatgctgtgcaaaatg
ctcatcatgtccgtgcatctgggctgcagcgaagagatgctgaccatcgtgtccatgctg
tcggtgcagaacgtcttctacaggcccaaggataaacaagccctggcagatcagaagaag
gccaagttccaccagacagaaggggaccacctcactctgctggccgtctacaactcctgg
aagaacaacaagttctccaacccctggtgttacgagaactttatccaggcccgttccctg
cgccgggctcaggacattcgcaaacagatgttaggcataatggacaggcacaagctggat
gtggtctcctgtggcaagtccacagtccgcgtgcagaaagccatctgcagtggcttcttt
cgtaatgccgccaagaaagacccccaggagggttaccggacactgatcgaccagcaggtg
gtctacatccacccgtccagcgcactcttcaacagacagcctgagtgggtggtgtaccac
gagctggtgctgacgacgaaggagtacatgcgtgaggtgaccaccatcgacccccggtgg
ctcgtggagtttgccccggccttcttcaaagtctccgacccaacgaaactaagcaagcag
aagaagcagcagcgtcttgagcccctgtataaccgctacgaggagcccaacgcctggaga
atctcccgggccttccggcggcgctga
DBGET
integrated database retrieval system
