KEGG   Sorex fumeus (smoky shrew): 130035764
Entry
130035764         CDS       T10594                                 
Symbol
MDC1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
sfum  Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:sfum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfum03400]
    130035764 (MDC1)
DNA repair and recombination proteins [BR:sfum03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    130035764 (MDC1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 130035764
NCBI-ProteinID: XP_055983636
LinkDB
Position
Unknown
AA seq 1624 aa
MEDTQVINWDLEEEEETEEPSEPLGHSLEPVGRLRFFSSPQAPEKDFPLYLGKNVVGRMP
DCAVALPFSSISKQHAVIEILACDKAPILRDCGSLNGTQILRPPKVLKHGMSHRLRDQEL
ILFGDLPCQYYRLAIPKPFVCRGPLTVEQTPRVQGAQPQELLLAEDSEEEVDPTFEEPKT
TSSPLTTVVPESDEEGGLPAPDGPGPPFVFNLDSDTDEEIKPPVSGGDSFIARRDAIAET
EPKTDGTAAESQIAKDPCAVKKKNHDSKAESDPGGEKSQAADEDSDTDVDDKSISTGRLA
GDHLEMIRSSGFMDSDTDVEEEGIPATPAVAPLKQRLVIYGVGTNSSGAPDLTHRQENPS
DSDTDVEESKAPLPAPLERSLGSMEIDNEKDDKEEISVAPPLVSLKEETKESLAIKCSGS
PDTEGSSAQPVGLLEQNQTSTRRGSHTDMEEKGIPVKKKGRTVSKGHPDKAHPEKHQSPL
GDSDRKVDISSAGVQLEGNQASATEVISKQVEKKYQVPVVWTNQRNVEAEEDPRKLPGVH
PETSQSTASVCGAHAEKGTSLVSSAVADVSKSHLGTECAVVLLEPKKELETEAQGGSPVV
QVKEDSCPISGENPTDLVVDKGIPWEKPTQPLREEAQSPLEKEKHQAHRIKDSGDSHDDS
EDLDLQATQCFVKVETQSVEAEQSMEDEATQAYLLPHEPGPSCCSMPAQGALDESWEVLA
TQPFCSRESETPESQPATAFPEDTGSCLSLPGVAPQDQHPESPVPKQPWEIEDRGMQTVE
EDLGRFSCQIPPSEETSRDDQESPDISLPSAVPESSASQQKPLILHNQKHSAPQTVLALP
SPLECPIPRTRQKRSQKAPMTPLSSEPKKIHTKPNVKTQESPRMTPPVSSLALEPHNITP
RDQPVSSETTSRVTRGRARRSSVKTPELGVPTAPELQPSASTEQRIIPKRTSQATGSRTL
RSSVKTPEAGIATASELQSSHTIDQSVTSESTTRTTWGRTRRSSVKTPEPVVLTTPELQP
SACENQPVTPELTVRVTRSKGHGSSDKTLESVVPPAPEHQLYTPTDQAVTPEPTSWTTRG
RTSKSLKTSIPFVPVAPENRPSTPTVVPEPVIHTTRGRTRSSAGKTPEPVPPATRIQPTV
VIDQLVPLEIAQGRTRRSIKTPKSASPPNPELQPSTSTDQPVIPEPLSQTTQGTSVKTSQ
LPEPTFLGLEHIPTDQSVIPETKAQDGQGKRLRSSVSAATSESQSPAPNPTPQANCGRKA
RANRKHGSLAVTIVHEVSSVPPEPVPQSSRSQKRAVKTAKSLQTKPEPVSPQPPETPTHV
PEVQKIEATQRSGHSPETRPKATQSQKRPLVIVDSSPLPKRLQRGEVPQKITFLKEEEED
TAEKPGKEEDVVVPEASKRKRAQAEEEPEGRAKRSLRRTKSNPDSTAPKVLFTGVVDERG
KRALLDLGGSLANSVAEASYLVTDRIRRTVKFLCALGRGIPILSLDWLYQSHKARRFLPP
DDYVVMDPEHEKNFGFSLKESLSRAQERRLLEGYEIHVTPGVQPPPAEMGEIISCCGGTL
LTSMPRAYKPQRVVITCSQDFHRCSVPLRVGLPILSPEFLLTGVLKQEVKPEAFIFSALE
KAST
NT seq 4875 nt   +upstreamnt  +downstreamnt
atggaagatacccaggttattaactgggaccttgaggaagaggaggaaacagaagaaccc
agtgaacctctggggcatagcttggaacctgtagggagactacgtttcttcagcagtccc
caagcaccagaaaaagatttcccactctacctggggaagaatgtggtaggtcgaatgcct
gattgcgctgtggccctgcccttctcatccatctccaaacaacatgcagtgattgaaatc
ttggcctgtgacaaggcacctatcctccgagattgtgggagcctcaatggtactcagatt
ctgagacctccaaaagtcttaaaacatggaatgagtcatcgtctgagggaccaggagttg
attctctttggtgacttgccctgccagtattatcgcctggctatccccaagccgtttgtt
tgccggggccctttaactgtggagcagacaccgagagttcagggagctcaaccccaggaa
ctcctgttggctgaggactcagaggaggaagtagatcctacttttgaagaaccaaaaacc
acatcttcccctttgacgacagtagttccagagagtgatgaagagggagggttgcctgcc
ccggatggtcctgggccaccttttgtcttcaacctggacagtgacacagatgaagaaatt
aagccaccagtttcaggaggggactccttcattgccagaagagatgccattgcagagaca
gaaccaaaaactgatggaaccgcagctgagtcccagattgcaaaggatccatgtgcagtg
aagaaaaagaaccatgacagcaaagctgagagtgatcctggtggggagaagagccaagct
gctgacgaggacagtgacacggatgtggatgacaagagcatatccacaggtcggcttgct
ggagaccatttggaaatgatccgttcttctggtttcatggacagtgatactgatgtggaa
gaagaagggatcccggcaacccccgcagttgctcctttgaaacagaggctggtcatctat
ggagtaggcacaaacagttctggggcaccagacttgacacatcggcaggagaatccaagt
gatagtgacacagatgtggaggagagcaaggccccactgcctgctcctctggagagaagc
ctaggctccatggagattgacaacgagaaggatgacaaggaagaaatctcagtagctccc
cctttggtatccctgaaagaggaaaccaaagagagccttgccattaaatgcagcggaagt
ccagacacagaagggagcagtgcccaacctgtgggtcttctagaacaaaaccaaacctcc
actaggaggggcagtcacacagacatggaggagaagggaattcctgtgaaaaagaaagga
agaactgtctctaagggtcacccagacaaggcacatccagaaaagcaccaatctcctctt
ggggacagtgatagaaaggtagatatcagctctgctggggtccagttggagggaaaccaa
gcctctgccacagaggtcatcagcaaacaggtggagaaaaagtatcaggtacccgtggtg
tggacaaatcaaagaaatgtggaagcagaagaggatccaagaaaactgcctggagtgcat
ccagaaacatcccagtccactgctagcgtctgtggggcacatgcagaaaagggcacatcc
ttagtatcctcagcagtggcagatgtaagcaagagccaccttgggacagagtgtgctgtg
gttctccttgagccaaagaaggaactggagaccgaggctcagggtgggtcacctgtggta
caagtgaaggaggactcttgccctatctcaggggagaacccaacagatctggtggtggac
aaaggtattccatgggaaaaacccactcagccactgagagaggaagcccagagcccccta
gaaaaggagaaacaccaggcccacagaatcaaggactcaggagacagccatgatgattct
gaagacctagacttgcaggctacccagtgctttgtgaaggtcgaaactcagagtgtggaa
gcagaacagagcatggaggatgaagccactcaggcctacctgctaccccatgaacctgga
ccttcctgttgcagcatgccggcccaaggtgccctggatgagtcatgggaggtcttggct
acacagccattctgttcaagagagtctgagacccctgagagccagcctgctacagccttc
cctgaggacactggatcttgcctctctttacctggagtagcaccacaggaccaacatcct
gagagtccagttcccaaacagccatgggagattgaagacagaggaatgcaaactgtggaa
gaagacttgggccgcttcagttgtcagataccaccctctgaggagacatccagggatgat
caggaatctccagatatttccctgccttctgcagtgcctgaatcctcagcttctcagcaa
aagcccctcatccttcataaccaaaagcactctgcccctcagaccgtgcttgctctccct
tcaccattagagtgtcccattcctaggactaggcaaaaaaggagtcagaaagctccaatg
actcctttgtcctcagaaccgaagaaaatccacacaaagcccaacgtgaagactcaggag
tctcccagaatgactcctccggtttcttcacttgcccttgaaccccacaatatcactcct
agagaccagccagtcagctctgagaccacatctcgggtcactagaggcagggcacgtagg
tcctctgtcaagactcctgaactaggtgttcctactgcccctgagcttcagccttctgct
tccacagaacagcgtatcatccccaaacgcacatctcaggccactgggagcaggacactt
aggtcctctgtcaagactccagaagcaggtatagccaccgcttctgagctgcagtcttcc
cacaccattgatcagtctgtcacttctgagtccacaactcgtaccacttggggcaggaca
cgtaggtcctctgtcaagacccctgaaccagttgtcctcacaacccctgagctccagcct
tctgcttgtgaaaatcagcctgtcacccccgaattgacagtccgtgtcactaggagcaaa
ggacatgggtcctctgacaagacccttgaatcagttgtccccccagcccctgagcaccag
ctttacacccccacagaccaagctgtcactcctgaacccacatcttggaccactcgagga
agaacatccaagtctctcaagacctctataccatttgtccccgtagcccctgaaaaccga
ccttctactcccactgttgtccctgagcccgttattcacaccactcggggcaggacacga
agttctgcaggcaaaacccctgaaccagttcctccagccaccagaattcagcctactgtc
gtcatagaccagcttgttccattggagattgctcagggcagaacacgtagatctattaaa
acccccaaatcagctagccccccaaaccctgagctccagccttccacttccacagatcaa
cctgtcatccctgaacccctatctcaaaccactcaaggcacatctgtgaagacctcccag
ttacccgaacccacattccttggtcttgaacatattcccacagaccagtctgtcatacct
gagaccaaagctcaggatggtcagggcaagaggctgaggtcttcagtaagcgctgctacc
tctgaatcccagtcgcctgccccaaatcccacccctcaagccaactgcggcaggaaggca
agggccaataggaaacatgggtccctcgcagttaccattgtccatgaagtcagctctgta
cctcctgagcctgttcctcagtcctcaaggagccagaaacgagctgtaaaaacggctaag
tcccttcagaccaaacctgagccagtctctcctcagcctcctgaaacacccactcatgtg
cctgaggtccaaaagatagaggcgacccagaggtctgggcacagcccagagacccggcct
aaggccacccaaagccaaaagaggcctctggtcattgtggattcatccccacttccaaaa
cgactccaaagaggagaagtcccccagaagataacattcctcaaggaagaggaagaagac
actgcggagaagccaggaaaggaagaggatgtagtggttccggaagcaagcaagaggaag
agagcacaggctgaggaggagccagaggggagagcgaagcgcagtctccggcgcaccaaa
tctaacccagattccacagcccctaaagtgctcttcacaggcgtggtggatgagcgtggc
aagcgggcgctgctggacctgggggggagcctggccaattcagtagcagaagcttcctac
ttggtgactgatcgaattcgccggacagtcaagtttttgtgtgccctggggcggggcatc
cctatcctctccttggactggttgtaccagtcccacaaggctcgtcgcttcttacctccg
gatgactatgtggtgatggatcctgaacatgagaagaactttggcttcagccttaaggaa
tccctgagccgggctcaggagcgaaggctattggagggctatgagattcatgtgacccct
ggggtccagccgccgccagctgagatgggagagatcatcagctgttgcgggggcactctc
ctgaccagcatgccccgggcctataagcctcagagagttgtgatcacatgctcccaggac
ttccatcggtgctccgttccactgcgagttggacttcccatcctctcacctgagttcctt
ttgactggggtgttgaaacaagaagtcaagccagaggccttcatcttctctgctttggaa
aaggcatccacctga

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