Sorex fumeus (smoky shrew): 130036732
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Entry
130036732 CDS
T10594
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04613
Neutrophil extracellular trap formation
sfum05014
Amyotrophic lateral sclerosis
sfum05034
Alcoholism
sfum05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
130036732 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
130036732 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
130036732 (HDAC6)
09165 Substance dependence
05034 Alcoholism
130036732 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfum01009
]
130036732 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130036732 (HDAC6)
04131 Membrane trafficking [BR:
sfum04131
]
130036732 (HDAC6)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130036732 (HDAC6)
Enzymes [BR:
sfum01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130036732 (HDAC6)
Protein phosphatases and associated proteins [BR:
sfum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130036732 (HDAC6)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130036732 (HDAC6)
Membrane trafficking [BR:
sfum04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130036732 (HDAC6)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
130036732 (HDAC6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
130036732
NCBI-ProteinID:
XP_055984607
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MTQFIYIRYGENCEGSRWWQFWASPSSWGLGGRAVWGGEQLSGDVCSLPLYLYGSWLSLQ
NPYVCACLATGSILTLVDAMMEEEIRNGMAIIRPPGNHPQHSRMDECCMFNHVAVAARYT
QQRHNLQRILIVDWNVHHGQGTQLIFDEDPSVLCISIHHYEQNQVCPHLKASNWSPTGVG
PGQGYTINVPWNQVSVCKSFAPLPKRMLPACMAVCPHHASLQEGMRDADYIAIFLRILLP
VALEFQPQLVLIATGFDALQGDLKGEMSTTPAGFAQLTHLLMGLADGKLILCLEGGYNLC
SLAEGVTASLHTLLGDPCPMLDSPGAPCPSAQASLFCALEALEPFWEILALSAESLKGDP
VERESLENSKAKAKATSLEPPSAPVLSWPTLQARTGLISDQRMMQHYNIWDSHHPERPER
ISRIMCRLEELGLVKRCQLLAARPATDYELLRCHSVEYLSRLRATEKMKGRELYRESISF
DSIYICSSTFSCAQLAAGATCRLVEAVLSGEVLNGIAVVRPPGHHAEMNSACGFCFFNTI
SVAARHAQAFSGQMLRILIIDWDVHHGNGTQHTFEEDSSVLYISLHRYDHGTFFPVGDEG
SSSKVGRGDGAGYNINVAWNGPRMGDTEYLAAWHRLVLPVAYEFNPELILVSAGFDAARG
DPLGGCLVTPEGYAHLTHLLMGLAGGRIIIVLEGGYNLTSISESMAACTRTLLGDPPPLL
ALDRPLKANALASISETIQVHRRYWRSLRVTRRGDIKRLCPKRYHQEASHSGFREEIIIP
GAAALDAGGGESTSVSSVEEATSSLSKSDIKTSLMVGAENKSSEVAERHTSWDDTIPERA
MAQATLGKNPSASCTVTTLPPSFEQEVISPGMPASPLKALGPASAAQAIPDMKAVEEESP
VEGAIGGQEVNDSLLFQVLENQVDLEQVSFYAITPMTWCPHLELVCPVPKVGLDVTVPCQ
DCGTYQENWVCLSCYQVYCGRYVNGHMVQHHEISGHPLVLSYADLSVWCYICQSYVHHQD
LMEVKNIAHQNKFGVNMPHSH
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgactcagtttatctacatccggtatggagagaactgtgagggcagcaggtggtggcaa
ttctgggcttctccatcctcatggggcctggggggtagggctgtgtggggaggagagcaa
ctgagtggagatgtgtgttctctcccactctacctgtatggctcctggctatctctgcag
aatccatatgtctgtgcctgcctggccacgggctcaatcctcacactggtagatgccatg
atggaagaggagatccggaatggcatggccatcatcaggcctcctggaaaccatccccag
cacagtcgtatggatgagtgttgcatgttcaaccatgtagccgtggctgcccgctatact
cagcagagacataacctccagaggatccttatcgtggattggaatgtacaccatggtcag
ggcacccagctcatctttgatgaggaccccagtgtcctgtgtatctccatccaccactat
gaacagaatcaggtctgtccccatcttaaagcctcaaactggtctccgacaggagttggt
ccaggtcagggatataccataaatgtgccttggaaccaggtaagtgtgtgcaaatccttt
gcccctctccccaagagaatgctacctgcctgtatggcggtatgtccccatcatgcctct
ctgcaggagggaatgcgagatgctgactacattgccattttcctgcgcatccttctgcct
gtggcactcgagttccagccccagctggtacttatagctactggatttgatgccctccaa
ggggacctcaagggtgagatgtccaccactcccgcagggtttgcccagcttacccacctg
ctcatgggcttggctgatggcaagctgatcctttgtctggagggtggctacaacctgtgt
tctctggctgagggtgttactgcctctctccacacccttctgggagacccatgtcccatg
ctggactcccctggggccccgtgcccaagtgcccaggcatccctattttgtgctctggaa
gccctagagcccttctgggagatccttgcactgtcagctgagtccctgaaaggggaccca
gtggagagggagagcctggagaacagcaaagcaaaggcaaaggccacatcactggagcct
cccagtgctccagtcctatcatggcccacgctacaggccaggacagggctcatctcagat
cagcggatgatgcagcattacaacatctgggacagccaccacccagaaaggcctgagcgc
atctcgcgtataatgtgtcgcctagaagagctgggcctggtaaagcgctgccagcttctg
gctgcacgtccggccacagattatgaactactcaggtgtcacagtgtggagtacctgagc
cgtctacgggccacagagaagatgaaaggccgagagctttaccgggaaagcatcagcttt
gattccatctacatctgttctagtaccttctcatgtgcccaactagctgcgggtgctact
tgccgtttggtggaggccgttctctctggagaggtcttgaatggaattgctgtggtccgc
ccaccaggtcaccatgccgaaatgaattctgcatgcggtttttgttttttcaacacaatc
tcagtggctgctcgacatgcccaggctttcagtggacaaatgctacggatattgatcata
gactgggatgttcatcatggtaatggaacccagcacacattcgaggaggattccagtgta
ttgtacatctctttacaccgctatgatcatggaacattctttcccgtgggggatgaaggc
agcagcagcaaagtgggacgaggtgatggtgcgggctacaatatcaacgtagcatggaat
ggaccccgcatgggtgacactgagtacctggctgcttggcatcgtttggtgcttcctgtt
gcctatgagtttaacccagagctcatccttgtgtctgctggttttgatgctgcccggggt
gacccccttggaggctgccttgtgacacccgagggctatgcccatctcacccacctgctg
atgggccttgctggcggtcgtattatcatcgtgcttgagggtggctataatctgacgtcc
atctcagagtccatggcagcctgcacccgcaccctcctgggcgacccaccaccactgctg
gctttagatcgccctctaaaagcaaatgccctggcctccatctccgagaccatccaggtt
catcgtagatactggcgtagtttacgtgtcacaaggaggggtgatatcaaaagactttgt
cctaaaagataccatcaggaagcgtcccactctgggttccgagaagaaataatcatccct
ggagcagctgctctagatgccggtggaggcgaatctacttcagtatcatctgtagaagag
gccacttcgagtctgagtaagtcagacatcaagacatccttaatggtgggagctgagaac
aagtcctcagaggtggctgaacggcatacttcctgggatgacaccattccggagagagcc
atggcacaagccacactgggcaagaacccttccgcttcatgtactgtcactacactgcca
ccttcatttgagcaagaagttatatcacccggtatgccagctagccctctcaaggccttg
ggaccagccagtgcagctcaggccatacctgacatgaaggctgtagaagaagagagtcca
gtggaaggggccattggtggtcaggaagtgaatgattcactgctatttcaggtgcttgaa
aaccaagtggaccttgaacaggtctcattttatgccataacaccaatgacctggtgtccc
catttggagttggtctgccctgtacccaaagtaggactggatgttactgtaccttgccag
gattgtggcacataccaggagaactgggtttgtttatcttgctaccaggtctactgtggc
cgctatgttaatggccatatggtgcaacaccatgaaatctcaggacacccgctggtcctt
agctatgctgatctgtcagtctggtgctacatctgtcaatcttatgtacatcatcaggat
ctcatggaggtgaagaacatcgctcaccagaataagtttggggtaaacatgccccattca
cattaa
DBGET
integrated database retrieval system
