Sorex fumeus (smoky shrew): 130037307
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Entry
130037307 CDS
T10594
Symbol
SCN5A
Name
(RefSeq) sodium channel protein type 5 subunit alpha isoform X1
KO
K04838
voltage-gated sodium channel type V alpha
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04261
Adrenergic signaling in cardiomyocytes
sfum04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
130037307 (SCN5A)
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
130037307 (SCN5A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sfum04040
]
130037307 (SCN5A)
Ion channels [BR:
sfum04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130037307 (SCN5A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
CcmD_alt
FraC
Motif
Other DBs
NCBI-GeneID:
130037307
NCBI-ProteinID:
XP_055985037
LinkDB
All DBs
Position
Unknown
AA seq
1766 aa
AA seq
DB search
MVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTLLNDTNGSVEADGRVWESLDLYLNSKEN
YILKEGTLDVLLCGNSSDAGTCPVGSRCLKAGQNPDHGYTSFDSFAWAFLALFRLMTQDC
WERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQATIAETEEKEKR
FQEAMEMLKKEHEALTIRGVDTVSRSSLEMSPLAPVITHERRSKRRKRMSSGTEEGGDDR
FPKSDSEDGPRALNRLSLTHGLSRTSMKPRSSRGSIFTFRRRDLGSETDFADDENSTAGE
SESHRMSLPVPWPLRRPSAQGQPSPGASTPGHVLNGKRNSTVDCNGVVSLLGAGDGDATS
LGSRLLRPMMLERPPDTTTPSEEPGRPQMLTPQVPLMDGFEGPAERQRALSAVSVLTSAL
EELEESHRKCPPCWNRFAQRYLIWDCCPFWLSIKQKVKFMVMDPFADLTITMCIVLNTLF
MALEHYNMTTEFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQGWNIFDSIIVTLSL
MELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKNYSDLSYRISSNTDLPPRWHMIDFFHAFLIIFRILCGEWIETMWDCMEVS
GQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDGEMNNLQLALARIQRGL
RFVKQTTRDFCCRLLHRRPPKPAALAPRGRLPSCMAAAGSPPPPEPEKPPPARKETRFEE
GKRPGQGTPGDSEPVCVPIAVAESDTDDQEEDDENSLGTEEETSKQQESQPVSDGPEALP
EPRAWSQASETATSEAEACVAPADWQQRAAEPPASGCSETHEDSFSEGSTADMTNTADLL
EQIPDLGEDVKDPEDCFTEGCVRRCPCCAVDITQSPGKVWWRMRKTCYRIVEHSWFETFI
IFMILLSSGALAFEDIYLDERKTIKVLLEYADKMFTYIFVLEMLLKWVAYGFKKYFTNAW
CWLDFLIVDVSLISLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAI
PSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTLGDLPLNYTFVNNKSDCESFNVTG
ELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQWEYNLYMYIYFV
VFIIFGSFFTLNLFIGVIIDNFNQQKKKIRGQDIFMTEEQKKYYNAMKKLGSKKPQKPIP
RPLNKYQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKVNILTKINLLFVAIF
TGECIVKMAALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIG
RILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVKWEAGIDDM
FNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPSCDPNLLNSNGSRGNCGSPAVGILF
FTTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYETWEKFDPEATQFIEY
AALSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDAL
KIQMEEKFMAANPSKISYEPITTTLRRKHEEVSATIIQRAFRRHLLQRSVKHASFLYRQQ
TGSSGLSDDDAPERGGLIAYMMNENYSQRRGPPSSSSISSTSFPPSYDSVTRATSDNLPV
RVSDYSRSEDLADFPTSPDRDRESIV
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggtcctcaccgtcttctgcctcagcgtctttgccctcatcggcctgcagctcttcatg
gggaacctccggcacaaatgcgtgcgcaacttcacgctgctcaatgacaccaacggctcc
gtggaggccgacggccgcgtctgggagtcgctggacctctacctcaacagcaaagagaac
tacattctgaaggaaggaaccttggacgtgctactgtgtgggaacagctcggacgccggg
acatgtcctgtgggctctcgctgcctgaaggcaggccagaaccccgaccatggctacacc
agcttcgactcctttgcctgggccttcctcgcgctcttccgcctgatgacgcaggactgc
tgggaacgcctctaccaacagacactgaggtctgcagggaagatctacatgatcttcttc
atgcttgtcatcttcctgggctctttctacctggtgaacctcatcctggccgtggtcgcc
atggcctacgaggagcaaaaccaagccaccatcgcagagaccgaggagaaggaaaagcgc
ttccaggaagccatggagatgctcaagaaggaacacgaggccctcaccatccggggtgtg
gacaccgtgtctcgcagctccttggagatgtccccattggccccggtgatcacgcacgag
agaaggagcaagaggagaaaacgaatgtcttctggcacggaggagggaggggatgacagg
ttccccaaatccgactcggaagatggccccagagcactgaatcgactcagcctcacccac
ggcctcagcagaacctcgatgaagccacgctccagccgcgggagcatcttcaccttccgc
cggcgagacctgggttccgagaccgatttcgctgacgatgaaaacagcacagccggggag
agcgagagccaccgcatgtccctcccagtgccctggcccctgcgccggcccagtgctcag
ggacagccaagtcctggggcctcaactcccggccacgtcctcaatggcaaaagaaacagc
accgtggattgcaacggggtggtctccttgctgggggccggcgatggtgacgccacctcc
ctggggagtcgcctcctccgccccatgatgctggagcgtcccccagacacgacgacgcct
tcggaggagccgggcaggccgcagatgctcacccctcaggttccactcatggatggcttc
gaggggccagcagagcggcagcgggccctgagcgcggtcagcgtcctcaccagtgcactg
gaagagttggaggagtctcaccgcaaatgtccaccatgttggaaccgctttgcccagcgc
tacctgatctgggattgctgcccattctggctatccatcaagcagaaagtgaagttcatg
gtcatggacccatttgccgacctcaccatcaccatgtgcatcgtgctcaacactcttttc
atggcactcgagcactataacatgacgaccgagtttgaggagatgctgcaagtcggaaat
ctggtcttcaccggcatcttcacagcagagatgaccttcaagatcatcgcccttgacccc
tactactacttccagcagggctggaacatcttcgacagcatcatcgtcacgctgagtctc
atggaactgggcttgtcccgcatgggcaacctgtcggttctgcgctccttccgcctgctg
cgggtctttaagctggccaagtcctggcccaccttgaacaccctcatcaagatcatcggg
aactcagtgggggctctggggaacctgaccctggtgctggccatcatcgtgttcatcttc
gctgtggtggggatgcagctctttggcaagaactactcggatctgagctaccgcatcagc
agcaacacagacctgccgccccggtggcacatgatcgatttcttccatgcttttctcatc
atcttccgtatcctctgtggcgagtggatagagaccatgtgggactgcatggaggtatcc
gggcagtccctctgcctgctggtcttcttactggttatggtcatcggcaaccttgtggtc
ctgaacctcttcctggccttgctgctcagctcgttcagcgcagacaacctcacggctccc
gatgaggacggggagatgaacaacctccagctggccctggcccgcatccagcggggcctg
cgatttgtcaagcagaccaccagggacttctgctgccggctcctccatcgcaggcccccc
aagcccgcggcccttgccccccgcggccggctgcccagctgcatggccgccgccggctca
cccccacccccagagccagagaagccccctccagcccgcaaggagacgcgtttcgaggaa
ggaaagcggcccggtcagggcaccccgggggactcagagcccgtgtgtgtgcccattgct
gtggccgagtcggacacagacgaccaggaggaggacgacgagaacagcctgggcacggag
gaggagaccagcaagcagcaggaatcccagcctgtgtccgacggccccgaggccctcccg
gagcccagggcctggagccaggcgtccgagacggccacctcggaggccgaagcctgtgtg
gctccggcagactggcagcagcgggcggcggagcccccggcctcagggtgcagtgagacg
cacgaggacagtttctctgagggcagcaccgcggacatgaccaacaccgccgacctgcta
gagcagatccccgacctgggcgaggatgtgaaggaccccgaggactgcttcacggaaggc
tgtgtccggcgttgtccctgctgtgccgtggacatcacccagtccccagggaaggtctgg
tggcgcatgcgcaagacctgctaccgcatcgtggagcacagctggttcgagacattcatc
atcttcatgatcctgctcagcagtggcgcgctggcctttgaggacatctacctggatgag
cggaagaccatcaaggtcctgctagagtacgccgacaagatgttcacctacatcttcgtg
ctggagatgttgctcaagtgggtggcatacggcttcaagaagtacttcaccaacgcctgg
tgctggctggacttcctcattgtggacgtctcgcttatcagcctggtggccaacaccctg
ggcttcgccgagatgggacccatcaagtctctgcggacgctccgagctctccggccactg
cgggctctgtcccggtttgagggcatgcgggtcgtggtcaatgccctggtgggcgccatc
ccatccatcatgaacgtcctcctcgtctgcctcatcttctggctcatcttcagcatcatg
ggcgtgaacctcttcgccggcaagtttgggcggtgcatcaaccagaccttgggcgacctg
cccttgaactacacctttgtgaacaacaagagcgactgtgagtccttcaacgtgacagga
gagctctactggaccaaggtgaaggtcaacttcgacaacgtgggagccggctacctggcc
ctcctgcaggtggccacattcaaaggctggatggacatcatgtatgcggctgtggactcc
agagggtacgaggagcagccgcagtgggagtacaacctctacatgtacatctactttgtc
gttttcatcatctttggctccttcttcaccctgaaccttttcatcggtgtcatcatcgac
aacttcaaccaacagaagaaaaagatacggggccaggacatcttcatgactgaggagcag
aagaagtattacaacgccatgaagaagctgggctccaaaaagccccagaagcccatccca
cggcccctgaacaagtaccagggctttatattcgacatcgtgaccaagcaggccttcgac
gtcaccatcatgttcctcatctgcttgaacatggtgaccatgatggtggagacagatgac
cagagccccgagaaggtcaacatcttgaccaagatcaacctgctcttcgtggccatcttc
acgggcgagtgcatcgtcaagatggctgccctgcgccactactacttcaccaacagctgg
aacatcttcgacttcgtggtggtcatcctttccattgtgggtaccgtgctctcggacatc
atccagaagtacttcttctcgcccaccctcttccgcgtcatccgcctggcccgcatcggc
cgcatcctcaggctgatccgcggggccaagggcatccgcacgctgctcttcgccctcatg
atgtccctgcccgccctcttcaacattgggctgctgctcttcctcgtcatgttcatctac
tccatcttcggtatggccaacttcgcctacgtcaagtgggaggcaggcatcgacgacatg
ttcaacttccagaccttcgccaacagcatgctgtgcctcttccagatcaccacgtcggcg
ggttgggacgggctcctgagccccatcctcaacacggggcccccgtcctgcgaccccaac
ctgctcaacagcaacggctcccgggggaactgcggcagcccggctgtgggcatcctcttc
ttcaccacctacatcatcatctccttcctcattgtggtcaacatgtacatcgccatcatc
ctggagaacttcagcgtggccacggaggagagcacggagcccctgagcgaggacgacttc
gacatgttctacgagacctgggagaagttcgaccccgaggccacccagttcatcgagtat
gccgccctctccgacttcgccgacgccctctcagagccactgcgcatcgccaagcccaac
cagatcagcctcatcaacatggacctgcccatggtgagcggggaccgcatccactgcatg
gacattctcttcgccttcaccaagcgggtgctgggcgagtcgggcgagatggacgccctc
aagatccagatggaggagaagttcatggcggccaacccgtccaagatctcctacgagccc
atcaccaccacgctgcggcggaagcacgaggaggtgtccgccacgatcatccagagggcc
ttccgccgccacctgctccagcgctccgtcaagcacgcgtccttcctctaccgccagcag
acaggcagcagcggcctctcagacgacgacgcccccgagcgaggggggctcattgcctac
atgatgaacgagaactactcccagcgccggggccccccctccagctcctccatctcctcc
acgtccttcccaccgtcctacgacagcgtcaccagggccaccagtgacaacctgcccgtg
cgggtgtcagactacagccgcagcgaggacctggccgatttccccacatccccagacagg
gaccgcgagtctatcgtgtga
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integrated database retrieval system
