Sorex fumeus (smoky shrew): 130037478
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Entry
130037478 CDS
T10594
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sfum04040
]
130037478 (SCN11A)
Ion channels [BR:
sfum04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130037478 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Zn_ribbon_IFT122_C
Motif
Other DBs
NCBI-GeneID:
130037478
NCBI-ProteinID:
XP_055985294
LinkDB
All DBs
Position
Unknown
AA seq
1787 aa
AA seq
DB search
MDDRCYPVIFPDARNFRPFTADTLATIKKRIAIQKEKKKSKTVTSDEPLPRPQLDLKASR
KLPKLYGDIPRELVSKPLEDLDPFYRNHQTFMVLNKKRTIYRFSAKRALFIFGPFNPVRS
LAIRISVHALFSMFIICTVIINCVFMATAGVKESNSNITDTNIAEYVFTGIYIFEALIKI
LARGFILDEFSFLRDPWNWLDSIVIATAVVSFFPSVSVNLSSLRTFRVLRALKAISVISG
LKVIVGALLRSVKKLVDVMILTLFCLSIFALVGQQFFMGNLKYKCVRNDCPPNSSNESCF
EKKNNSNEFRLCGTWMENGSACSDGFGCHLTACNPDYGYTNFDNFGWSFLAMFRLMTQDS
WEKLYQQTLRTSGLYAVFFFVLVIFLGSFYLINLTLAVVTMAYEEQNRNVAAETEAKEKM
FQEAQQLLREEKEALIAMGIDRSSLNSLEASSFSPKKRKLFGSSKRKSFFLRKSRKDQAP
GSDSEEDSPTKPPLLEQTKRLSKNLSVEQPDELGDPFQRQRALSAVSILTITMQEQEKSE
EPCLPCGENLASKYLVWDCSPHWLAIKKPLKIVMTDPFTELAITICIIINTIFLAMEHYP
MEKDFENMLNTGNLVFTGIFLAEMCLKIIALDPYHYFSRGWNVFDSIVALLSFADVMHTR
ISEKLYDRSVDRRSYIRSFRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVF
IFSVVSMQLFGFRFNSTRNVSNSCVNALTVSQQKRRWHMGDFFHSFLVVFRILCGEWIEN
MWECMQEADATLCIIVFLSIMVIGKLVVLNLFIALLLNSFSNEEKDVNSEGDAKKTKVQL
ALDRFHRAFRFVINTLRHFCCQYCRRQKLSKQKEVTDVLATETKGIIPLVIEMKGGPCDE
FGVQTSASKTLNIGHDRIWLAPLAEEEHDFDSVPKVNVPEAEKKVYTSPQETKSTNSPGV
PTVEIVVFGDDTSPSMQNPQKNFDAISLFSDCSTIEPQDTVGRVLEMVPKKQPGRCLPKG
LRFCFPCCAVDKRKSPWMLWWKLRKTCYQIVKHSWFESFIIFVILLSSGALMFEDEFLPR
RPQIKELLEYTDKFFTFIFILEMGLKWVAFGFRKYFTNAWCWLDFIIVIVSVTTLIDVQT
LKPFRILRALRPLRALSQFEGMKVVVYALMGAIPAILNVLLVCLIFWLIFCILGINFFSG
KFGKCVNETDGNSMLNDSIVANKSECESRNLSWVNLKVNFDNVGMAYLSLLQVATFKGWL
EIMDAAVDSKEQEHQPRFEVNVYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISG
QDIFLTEEQKKYYNAMKKLGSKKPQKPIPRPLNKCQGFVFDVVTSQVFDIIIISLIILNM
ICMMAEYHGQSQNMKYTLDLLNTVFVVIFTMECLIKIFALRQYYFTNGWNLFDCVVVVLS
IVSTLISALESHQQNIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFN
IGLLLFLVMFIYAIFGMKWFGCVEPNAGIDDIFNFKTFVHSMLCLFQITTSAGWDTLLSP
MLQSKTSSCNNQTKDSHLSTIAITYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPL
GEDDFDIFYEVWEKFDPEATQFISYSALSDFADALPEPLRVPKPNRFQFLVMDLPMVNGD
RLHCMDILFAFTTRVLGNSSGLDSMKAMMEEKFMEANPLKKLYEPIVTTTKRMEEEKCAS
IIQKAFRKHMIRMTRCLLEDRPHEILQTLYNGDLPNAGVAEGKVHYD
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagatgctacccagtgatctttccagatgctcggaatttccgtcccttcact
gctgacactctggctaccattaagaagaggattgccatccaaaaggagaaaaagaagtct
aaaactgtgacatcggatgaacccctgcctcgacctcagcttgatttgaaggcctccagg
aagttgcccaagctctatggggacattccccgtgaactggtatcaaagcccttggaagac
ttagacccattctacagaaatcatcagacatttatggtgttgaataaaaagaggacaatc
taccgcttcagtgccaagcgtgccttgttcatttttgggcctttcaatccagttcggagt
ttagccattagaatctccgttcatgccctgttcagcatgttcatcatctgcacggtcatc
atcaactgtgtgttcatggccaccgctggggtgaaggagagcaacagcaacatcacagac
accaacattgccgagtatgtcttcactgggatttatatttttgaagctttgataaaaata
ttggcaagaggttttattctggatgagttttctttccttcgagatccgtggaactggctg
gactccatagtcattgcaacagcggttgtgtcattttttccatctgtctcagtaaacctg
tcatctctgcgcacctttcgagtattacgggccttaaaagcaatttctgtaatttcaggt
ctgaaggttattgttggggccctgctgcgctctgtgaagaagcttgttgacgtgatgatc
ctgactcttttttgcctcagcatctttgccctggtaggtcaacagttcttcatgggaaat
ctgaagtacaaatgtgtcaggaatgactgtcctccgaacagcagcaatgaatcttgcttt
gaaaagaaaaataattccaatgaattcagactatgtggcacctggatggaaaatggcagt
gcctgttctgatggatttgggtgccatctgactgcatgcaatccagactatggttatacg
aatttcgacaactttggctggtcttttcttgccatgtttagacttatgacccaagattcc
tgggagaaactttatcaacagactttgaggacctctgggctctatgcggtcttcttcttt
gttttggtcatcttcctggggtccttctatctgattaacttaactctggctgtggtcact
atggcttatgaggagcagaacaggaatgtagctgctgagacggaggccaaggagaagatg
ttccaggaagcccagcagctattaagggaggagaaagaggctctgattgccatgggaatt
gaccgaagttcacttaattcccttgaagcatcatctttttccccaaagaagagaaagctg
tttggtagtagtaaaaggaagtccttctttttgagaaagtctaggaaagaccaggctcca
ggatcagattctgaagaagattctccaacaaagccacctctacttgagcaaaccaaaaga
ctgtccaagaatctgtcagtggagcaacctgatgagcttggagaccccttccaaaggcag
cgggctctgagtgctgtcagtattctcaccatcaccatgcaggaacaagaaaagtcagag
gagccttgcctcccatgtggggaaaacctggcatccaaatacctcgtgtgggattgtagc
ccccactggttggccattaagaagcccctaaaaattgtgatgactgatccctttactgaa
ctggccatcaccatctgcatcataatcaacaccatcttcttggctatggagcattaccca
atggagaaggattttgagaatatgttgaacacagggaatttggttttcactgggatcttt
ttggcagaaatgtgcctaaaaatcatcgcgcttgatccctaccactactttagtcgaggc
tggaatgtttttgacagcattgttgctctcctgagttttgctgatgtgatgcacactcgg
atttctgagaagttgtacgatcgaagtgtagatcgaaggtcctatatccgttcttttaga
gtgctgagggtcttcaagttagccaagtcctggccaactttaaacacactgattaaaatc
atcggccactcagtcggagctcttggaaacctcactgtggtcctgaccattgtggtcttc
atcttctcagtggtcagcatgcagctttttggctttcgctttaattccacaaggaatgtt
tcaaactcctgtgtcaatgcacttacagtctcacaacagaaacgacgctggcacatgggg
gatttctttcattcctttctggtggtgttccgcatcctctgcggggaatggatcgaaaac
atgtgggaatgtatgcaggaagcagatgccacactgtgtatcattgtctttctctccatc
atggtgataggaaaacttgtggtactcaacctcttcatcgcattgctgctcaattccttc
agcaatgaggagaaagatgtaaactcagaaggagatgccaagaaaaccaaagttcaatta
gccctagatcggttccaccgggcctttcgttttgtgataaatactcttcgacacttttgt
tgccagtattgtagaaggcaaaaactatcaaaacaaaaagaggtgacagatgtgcttgcc
acagaaaccaaaggaatcatccccctggtcatagagatgaaagggggtccatgtgatgaa
tttggagttcaaacttctgcatcaaagaccttgaatattggccatgatcgaatttggttg
gctccacttgcagaggaagaacatgattttgactctgttcccaaagttaatgtacctgag
gccgagaaaaaggtttatacaagcccccaggaaactaagagtacaaacagtccaggagtt
ccaactgtagaaattgttgtgtttggtgatgatacctctccttcaatgcagaatccccaa
aagaattttgatgccatcagcttattctcggattgtagtaccattgagccacaggatact
gtggggcgggtgcttgaaatggttcccaaaaagcaacctgggagatgtttgcccaaaggt
ctgcgtttctgctttccatgctgtgctgtggacaagagaaaatccccctggatgctctgg
tggaagctgcggaaaacctgctaccaaatagtaaaacacagttggtttgagagctttatt
atctttgtgattcttctgagcagtggggcactgatgtttgaagatgagttcctcccaaga
agacctcaaattaaagaattacttgagtacaccgacaaatttttcacattcatttttatc
ctggagatgggtttgaagtgggtggcttttggatttaggaagtattttaccaatgcctgg
tgctggctggatttcatcattgtgattgtctctgtgacaacactcatcgatgttcaaacc
ttgaaacctttccgaattctccgagcactgcggcccctcagagcgctctcccagtttgaa
gggatgaaggtagttgtctatgcactcatgggtgctattcctgccattctgaatgttttg
cttgtctgcctcattttctggctcatcttttgtatcctgggcataaactttttttctgga
aaatttggaaaatgcgttaatgaaacagatgggaactcaatgctcaatgacagcattgtg
gcaaacaaaagtgaatgtgaaagcagaaatttatcctgggtcaacctcaaagtcaacttt
gacaatgtaggaatggcgtacctttccctgctgcaggtggcaacatttaagggttggttg
gagattatggatgcggcagttgattctaaagagcaagaacatcagccacgctttgaggtg
aatgtatacatgtacatttactttgtcgtttttatcatctttggctcattcttcactctg
aatctctttattggtgttattattgacaacttcaaccaacaacaaaaaaagataagtggt
caagacatctttttgacagaagaacagaagaaatactataatgcaatgaaaaaattagga
tccaaaaaacctcaaaagcctattccaagacctctgaacaaatgccagggtttcgtgttt
gacgtagtcacaagccaggtctttgacatcatcatcatcagcctcattattctcaacatg
atttgcatgatggctgaatatcatggacaaagtcaaaacatgaaatacacgcttgatctt
ctcaacacagtctttgtggtcatctttacaatggaatgtctcatcaaaatctttgctttg
aggcagtactacttcaccaatggctggaatttatttgattgtgtggtcgtggtcctttct
attgttagtacactcatttctgccttggaaagtcatcaacaaaacattcctttccctccg
acactcttcagaattgtgcgcttggctaggattggccgaattctgagacttgttcgggca
gcacgaggaattcggactctcctttttgctctgatgatgtcccttccctccctgttcaac
attggtcttctgctttttctggtcatgtttatttatgccatttttggtatgaaatggttt
ggctgtgtagaaccaaatgctggtatcgatgacatattcaacttcaaaacttttgtccac
agcatgttgtgtctcttccagatcaccacgtctgcaggttgggatactcttctcagcccc
atgttgcaatcaaaaacgagctcctgtaacaatcagacaaaggatagtcatctctctacc
atagccataacgtattttgtgagttacatcatcatttcctttctcatcgttgtcaacatg
tacattgctgtgattttagagaacttcaacacagccactgaagaaagtgaggacccttta
ggagaagatgactttgatatattctatgaggtctgggaaaagtttgacccagaagcaacg
cagtttatcagttattctgccctttctgattttgccgatgcccttcctgaacctttgcgt
gtgcccaaaccaaatagatttcaattcctagtaatggacttgcccatggtgaatggagat
cgactccactgcatggatatcctcttcgcttttaccacgagagtgcttggtaactccagt
ggcctggatagcatgaaggcgatgatggaagagaagtttatggaagccaaccctttgaag
aagttgtatgagcccatagtcaccaccacaaagaggatggaagaagaaaaatgtgcttct
atcattcaaaaggcctttcgaaagcacatgatcaggatgacgaggtgtctcttggaagat
agacctcatgaaatactccagactctctacaatggagacttgcccaatgctggggtggct
gagggcaaagtccactatgactga
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integrated database retrieval system
