Sorex fumeus (smoky shrew): 130037496 Help Entry 130037496         CDS       T10594                                  Name (RefSeq) toll-like receptor 9 isoform X1   KO K10161   toll-like receptor 9 Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04142   Lysosome biogenesis sfum04620   Toll-like receptor signaling pathway sfum05132   Salmonella infection sfum05142   Chagas disease sfum05143   African trypanosomiasis sfum05144   Malaria sfum05152   Tuberculosis sfum05162   Measles sfum05168   Herpes simplex virus 1 infection sfum05235   PD-L1 expression and PD-1 checkpoint pathway in cancer Brite KEGG Orthology (KO) [BR:sfum00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome biogenesis     130037496  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     130037496  09160 Human Diseases   09161 Cancer: overview    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer     130037496   09172 Infectious disease: viral    05162 Measles     130037496    05168 Herpes simplex virus 1 infection     130037496   09171 Infectious disease: bacterial    05132 Salmonella infection     130037496    05152 Tuberculosis     130037496   09174 Infectious disease: parasitic    05144 Malaria     130037496    05142 Chagas disease     130037496    05143 African trypanosomiasis     130037496  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04054 Pattern recognition receptors [BR:sfum04054]     130037496    04090 CD molecules [BR:sfum04090]     130037496 Pattern recognition receptors [BR:sfum04054]  Membrane-bound pattern recognition receptors   Toll-like receptors    130037496 CD molecules [BR:sfum04090]  Proteins   130037496 SSDB OrthologParalogGFIT Motif Pfam:  LRR_8 LRR_4 Cofilin_ADF LRR_12 TIR LRR_9 TIR_2 LRR_Zer-1 Motif Other DBs NCBI-GeneID:  130037496 NCBI-ProteinID:  XP_055985311 LinkDB All DBs Position Unknown AA seq 1320 aa AA seqDB search MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASREPVGSWDRDYDRAVLPL LDPQQPCYLLFRLDSRNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINEVNTEISVESKHQTLQGLAF PLQPAAQRALQQLQQRAVNYVQLKLDLERETIELVHTEPTEVAQLPSRIPRDAARYHFFL YKHTHEGDSLESVVFIYSMPGYKCSIRERMLYSSCKSRLLDSVEQDFQLEISKKGPRWSA RLPFSLLVQAVTLAEALALGTLPAFLPCELQAPGRVNCDWLFLTSVPHFSVAVRANVTSL SLRSNRIHHLHDADFAHLSSLRRLDLKWNCPPVGLSPLHFPCRMTVEPHTFLRVPTLEEL NLSYNGLTHVPALPRSLVTLSLSRTNILVLDPASLTGLPALRSLYMDGNCYYKNPCRQAV VVPPGALLGLGNLTYLSLKYNNLTRVPRDLPPSLESLLLSYNHIVALGPEDLANLTSLQV LDMGGNCRRCDHARNPCTECPRGFPRLHPDAFVHLRNLRGLVLKDSSLFSLDGRWFRNLP HLAVLDLSENFLYDCITKTTAFESLRQLRKLNLSFNYHKKVSFARLHLAPSFGKLVALRE LDMHGIFFRLLNSETLRPLRGLPQLQRLRLQMNFINWAQLPIFGTFQGLRFVDLSDNRIS GAAVPTGNSGGRELLRPPPRAPAPGRQPLLHAGQQFMPSCQSLNFTLDLSRNNLVSIQPE MFAQLSRLQCLHLSSNSIAQAVNGSQFTPLSSLRVLDLSHNKLDLYHGRSFTELPRLEAL DLSYNSQPFSMQGIGHNLSFVARLKALRHLSLAHNNIDSRVSQQLRSDSLVALDFSGNDL NRMWAEGDLYLRFFQELTVLQLLDLSQNRLHTLLPRSLENLPKSLQVLRLRDNFLAFFNW SSLAFLPELVALDLAGNQLKALANGSLPNGTRLQALDLSSNSITFVTPGFFAPAKGLREV NLSDNALKTVEPSWFGTVAVGLESLDVSANPLHCACGVPFVDFLLEVQAAVPGLPSRVRC GSPRQLQGRSIFTQDLRLCLDETLSWDCFGLSLLALLLGLALPLLHHLCGWDLWYCFHLG LAWLPRRGWRCGAGALPYDAFVVFDKAQPAVADWVYNELRVRLEERRGRRALRLCLEERD WLPGKTLFENMWDSVYRSRKTVFVLAHTDQVSGLVRASFLLAQQRLLDDRKDVVVLVILS PDGYRSRYVRLRQRLCRQSVLLWPHQPSGQVSFWTQLAVALTRDNRHFYNRNFCRGPTTA NT seq 3963 nt NT seq  +upstreamnt  +downstreamnt atggcgcaccagacgggcatccacgccactgaggagctgaaggaattctttgccaaggcc cgggctggctccgtccggctcatcaaagtcgtcatcgaggacgagcagcttgtgctgggg gcctcgcgggagccggtgggcagctgggacagagactatgaccgggctgtgctgccgctg ctggacccccagcagccctgctatctgctcttccgcctggactccaggaatgcccagggc ttcgagtggctcttcctcgcctggtcgcctgataactcccctgtgcgactgaagatgctg tacgcggccacacgggccacggtgaagaaggagtttgggggcggccacatcaaggatgag ctctttgggactgtgaaggacgacctctcctttgcgggctaccagaaacacctgtcgtcc tgcgcggcgcccgccccgctcacctccgccgagcgagagctgcagcagattcgcatcaac gaggtgaacacggagatcagcgtggagagcaaacaccagaccctgcagggcctcgccttc cctctacagcccgcggcccagcgcgccctgcagcagctgcagcagagagccgtcaactac gtccagctgaaactggacctggagcgggagacgattgagctggtacacacagagcccaca gaagtggcccagctgccctcgcggatcccccgagatgctgcccgctaccacttcttcctc tacaagcacacacacgagggtgattccctcgagtctgtggtgttcatctactccatgccc gggtacaagtgcagcatccgggagcgcatgctctactccagctgtaagagccgcctcctc gactctgtggagcaggacttccagctggagatctccaagaagggtccccgctggagcgcc cggctccccttctctctcctggtgcaggccgtcaccctggccgaggccctggccctgggt acactgcccgccttcttgccctgcgagctgcaggccccgggcagagtcaactgtgactgg ctcttcctgacatccgtgccccacttctcagtggcggtccgggccaacgtcaccagcctg tccctgcgttccaaccggatccaccacctccatgacgccgacttcgcccacctgtccagc ctgcggcgcctggacctcaagtggaactgcccgccggtgggcctcagccccctgcacttc ccctgccgcatgaccgtcgagccccacaccttcctgcgcgtgcccactctggaggagctg aacctgagctacaacggcctcacccacgtgcccgctctgccccgctcgctcgtcaccctg tccctgagccgcaccaacatcctggtgctcgaccccgcgagcctcacggggctgcccgcc ctgcgctccctctacatggacggcaactgctactacaagaacccctgccggcaggcagtg gtggtgcccccgggtgccctcttgggcctgggcaacctcacctacctgtccctcaagtac aacaacctcaccagggtgccccgcgacctgccacccagcctggagtccctgctgctgtcc tacaaccacatcgtcgccctggggcccgaggacctggccaacctgacctccctgcaggtg ctggacatggggggcaactgccggcgctgtgaccacgcccgcaacccctgcaccgagtgc cccaggggcttcccgcgtctgcaccccgacgctttcgtccacctgcgcaacctccgcggg ctggtgctgaaggacagctctctctttagcctggacgggcgctggttccggaacctgccc cacctggccgtgctagacctgagcgagaacttcctgtacgactgcatcaccaaaaccacg gccttcgagagcctgcgccagctgcgcaagctcaacctgtccttcaactaccacaagaag gtgtcctttgcccgcctgcacctggccccgtccttcgggaagctggtggccctgcgggag ctcgacatgcacggcatcttcttccgcctgctcaacagcgagacgctgcggccgctcagg ggcctgccccagctccagcgcctgcgcctgcagatgaatttcatcaattgggcccagctc cccatcttcggcaccttccagggtctgcgcttcgtggacctctccgacaaccgcatcagc ggagcggcggtccccaccggcaactcagggggccgggagctgcttcggccgccccccagg gctccggcgccaggccgccagcccctgctccacgccgggcagcagttcatgcccagctgc caaagcttgaacttcactctggacctgtcccgcaacaacctggtgagcatccagcccgag atgttcgcgcagctctcgcgcctgcagtgtctgcacctgagcagcaacagcatcgcgcag gccgtcaatggctcgcagttcaccccgctgagcagcctgcgggtgctcgacctgtcccac aacaagctggacctgtaccacgggcgctcgttcacggagctgccgcggctggaggcgctc gacctcagctacaacagccagcccttcagcatgcagggcatcggccacaacctcagcttc gtggcccggctgaaggccctgcgccacctcagcctggcgcacaacaacatcgacagtcgc gtgtcccagcagctccgcagcgactcgctcgtggccctggacttcagtgggaacgacctc aaccgcatgtgggccgagggagacctctatctccggttcttccaggaactgacggtcctg cagctgctggacctgtcccagaaccgcctgcacacccttctgcctcgcagcctggaaaac cttcccaagagcctgcaggtgctgcgcctccgagacaacttcctggccttctttaactgg agcagcctggccttcctccccgagctggtcgcgctggacctggcgggaaaccagctgaag gccctggccaacggcagcctgcccaacggcacccggctgcaggcactggacctgagcagc aacagcatcaccttcgtgacgcctggcttcttcgctccggccaaggggctgcgagaggtc aacctcagcgacaacgccctcaagacggtggagccctcgtggttcggcaccgtggccgtg ggcctggaaagcttggacgtgagcgccaaccctctgcactgcgcctgcggtgtgcccttc gtggacttcctgctggaggtgcaggctgccgtgcccggcctgcccagccgggtcaggtgt ggcagtccccggcagctgcagggacgcagcatcttcacgcaggacctgcgcctctgcctg gacgagaccctctcctgggactgcttcggcctctcgctgctggccctgctgctgggcctg gccttgcccctgctgcaccacctctgcggctgggacctctggtactgcttccacctgggc ctggcctggctgccccggcgggggtggcggtgcggcgccggggccctgccctacgatgcc tttgtggtctttgacaaagcgcagcccgccgtggccgactgggtgtacaacgagctgcgg gtgcggctggaggagcgccggggccgccgggcgctgcgcctgtgtctggaggagcgggac tggctccccggcaagaccctctttgagaacatgtgggactcggtctacaggagccgcaag acggtgttcgtgctggcacacaccgaccaggtcagcggcctggtgcgcgccagcttcctg ctggcccagcagcgcctgctggatgaccgcaaggacgtggtggtgctggtgatcctcagc cccgacggctaccgctcccgctacgtgcggctgcgccagcgcctctgccgccagagcgtc ctcctctggccccaccagcccagtggccaggtcagcttctggacccagctggctgtggcc ctgaccagggacaaccgccacttctacaaccggaacttctgcaggggccccaccacagcc tga

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