Sorex fumeus (smoky shrew): 130037651
Help
Entry
130037651 CDS
T10594
Symbol
TRIM71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
130037651 (TRIM71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130037651 (TRIM71)
04121 Ubiquitin system [BR:
sfum04121
]
130037651 (TRIM71)
Enzymes [BR:
sfum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130037651 (TRIM71)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130037651 (TRIM71)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130037651 (TRIM71)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
DUF4934
Filamin
DUF5128
zf-B_box
ANCHR-like_BBOX
SGL
zf-C3HC4
zf-RING_5
zf-B_box_Trim66
CRLF3_N
COG5_N
Motif
Other DBs
NCBI-GeneID:
130037651
NCBI-ProteinID:
XP_055985526
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSSSSASSSSSQTSTSSGGGGGGPAARRLHVLPCL
HAFCRACLEAHRLPGAGGGAPGEPLKLRCPVCEQKVVLAEAAGMDALPSSAFLLSNLLDA
VVATADEPPPKNGRAGAGAGGHSNHRHHAHPHAAAASAPPPPAPPPPAPARAAPGGPAAS
PSALLLRRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAA
AAQQLGLGPAFPGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGH
SFIYLQEALQDSRALTIQLLADAQQGRQALQLSIEQAQTVAEQVEMKAKVVQSEVKAVTA
RHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALD
VLLARDRMLAQVQELKSVRSFLQPQEDDRVMFTPPDQALYLAIKSFGFVSSGAFAPLTKA
TGEGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYL
VSYRPQLEGEHLVSVTLCNQHIENSPFKVLVKSGRSYVGIGLPGLSFASEGDTDGKLCRP
WGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVV
ADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGP
DGVFLNKYGFEGALWKHFDSPRGVTFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGT
GNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAI
TPDGMIVVVDFGNNRILVF
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttccccgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tcgccggcgccgctctcctccagctcgtccgcctcgtcgtcgtcctcgcagacttccacg
tcgtcggggggcggcggcgggggccccgcggcgcgccgcctgcacgtcctgccctgcctc
cacgccttctgccgcgcgtgcctcgaggcgcaccggctgccgggcgcgggcggcggcgcc
ccgggagagccgctcaagctgcgctgtcccgtgtgcgagcagaaagtggtgctggccgag
gcggcgggcatggacgcgctgccttcctccgccttcctgctcagcaacctgctggacgcc
gtcgtggccacggccgacgagccgccgcccaagaacgggcgcgccggcgcgggcgcgggc
ggtcacagcaaccatcggcaccacgcgcacccgcacgccgccgccgcctcggcgccgccg
ccgcccgcgccgccgccgcccgcgcccgcccgcgccgcgcccggcggcccggccgcctcc
ccgtcggcgctgctgctgcggcggccgcacggctgcagctcgtgcgacgagggcaacgcc
gcctcttcgcgctgcctcgactgccaggagcacctgtgcgacaactgcgttcgcgcgcac
cagcgcgtgcgcctcaccaaggaccactacatcgagcgcggcccgccgggaccggccgcc
gccgcccagcagctcggcctcgggccggccttccccggagcgcccttctccatcctctcc
gtgtttcccgaacgtctcggtttctgccagcaccacgacgacgaggtgctgcacctatac
tgtgacacttgctccgtgcctatctgtcgtgagtgtaccatgggtcgccacggaggccac
agtttcatctacctccaggaggcgctgcaggactcccgggctctcaccatccagctgctg
gctgacgcccaacagggacgccaggcactccagctaagcatcgagcaggcccagacggtc
gcggagcaggtggagatgaaggccaaggtggtccagtcggaggtgaaagcggtgacggcg
cgtcacaagaaagccctggaggagcgcgagtgtgagctgctgtggaaggttgagaagatc
cgccaggtgaaagccaaatccctgtaccttcaggtggagaaactacgtcagaacctcaac
aagctggagagcaccatcagcgcggtgcagcaggtgctggaggagggccgggccctggac
gtgctgctggcccgggaccgcatgctggctcaggtgcaagagctgaagagcgtgcgcagc
tttctgcagccccaggaggacgaccgggtcatgttcacgcccccagaccaggccctctac
ctggccatcaagtccttcggcttcgtcagcagcggagccttcgcgcccctcaccaaggcc
acgggcgagggcctgaagcgggccctgcaaggcaaggtggcctccttcacggtcatcggc
tacgaccacgacggggagccccggctgtctggtggcgacctgatgtctgccgtggtcctg
ggccccgacggcaacctgttcggggcagaggtgagcgaccagcagaacggcacctacctg
gtgagctaccggccacagctggagggcgagcacctggtgtcggtcaccctgtgcaaccag
cacatcgagaacagccccttcaaggtgctggtcaagtcgggccgcagttatgtgggcatc
gggctcccgggcctgagcttcgccagcgagggcgacaccgatgggaagctatgccgccct
tggggcgtgagcgtggacaaggagggctacatcgtcgtggccgaccgcagcaacaaccgc
atccaggtcttcaagccctgtggcgccttccaccacaagttcggcaccctgggctcccgg
ccgggccagttcgaccggcccgccggcgtggcctgcgacgcctcccgccgcatcgtagtg
gcggacaaggacaatcatcgcatccagatcttcaccttcgagggccagtttctcctcaag
ttcggggagaagggcaccaagaacgggcagttcaactacccttgggatgtcgccgtgaat
tccgaaggcaagatcctcgtctccgacacacgcaaccaccgcatccagctgtttggtccc
gacggagtcttcctcaacaagtacggcttcgagggggcgctctggaagcactttgactcc
ccccggggcgtgaccttcaaccacgagggccacctggtggtcaccgacttcaacaaccac
cggctgctggtcatccaccccgactgccagtcggcacgcttcctgggctccgagggcacc
ggcaatggtcagttcctgcgaccccagggtgtggccgtggaccaggaggggcgcatcatt
gtggccgattcccggaaccaccgggtgcagatgtttgagtccaatggcagcttcctgtgc
aagttcggggctcaaggcagtggctttggccagatggaccgtccttccggcatcgccatc
acccctgacggaatgatcgtcgtggtggactttggcaacaatcgaatccttgtcttctaa
DBGET
integrated database retrieval system
