Sorex fumeus (smoky shrew): 130038925
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Entry
130038925 CDS
T10594
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130038925 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130038925 (TAF5L)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130038925 (TAF5L)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130038925 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
130038925 (TAF5L)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130038925 (TAF5L)
STAGA complex
130038925 (TAF5L)
TFTC complex
130038925 (TAF5L)
SAGA complex
130038925 (TAF5L)
SLIK complex
130038925 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
eIF2A
Ge1_WD40
WD_LRWD1
Nbas_N
Mala_s_1-like
vATP-synt_AC39
Motif
Other DBs
NCBI-GeneID:
130038925
NCBI-ProteinID:
XP_055986701
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA
APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSDGNGLEPTDMPAPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSR
KLKSEPHQVDVSRIHLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCSAPTDGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagtgcgcaccgagcagattcagatggcagtgtcctgctacctcaaacgccgg
caatacgtggactcggacggtcccctcaagcaaggactgcggctttcacagactgctgaa
gagatggcagccaatctcacagtccaatcagaatctggttgtgccaacatagtgtctgca
gccccttgccaggcagagccgcaacaatatgaagtacagtttggacgactgaggaatttt
ctcactgattctgactcccaacatagccacgaagttatgcctctcctctatcctctcttt
gtctacctccatctaaacctggtccagaacagtccgaaaagcacagtggaaagtttttac
agccgcttccatggaatgtttctacagaatgctagccagaaggatgtcattgagcagcta
cagaccactcaaaccatccaggacatcctgtctaacttcaagcttcgagcattcctagat
aacaaatatgtggtccgtctccaagaagacagctacaactaccttatccgctacctccaa
agtgacaacaacaccgctctgtgcaaagtcctcaccttgcatatccatcttgacgtgcag
cccgccaagagaacagactaccagctgtatgccagtggcagttcctcacgaagtgatggc
aatggcttagagcccactgacatgcctgcccccattcttcagaacgaggctgccctggaa
gtcttgcaggagagcattaagcgtgtcaaggatggccctccctcccttaccaccatctgt
ttctatgccttctataatacagaacagctgttgaacactgcagaaatctccccagacagc
aagttgcttgctgctgggtttgacaactcctgtattaaactgtggagtttacgatccagg
aagttaaaatcagaaccccatcaagttgacgtttcccgcattcacttggcttgtgatatt
ttggaggaggaggatgatgaggatgataatgcaggcacagaaatgaagatactacggggg
cactgtggaccagtgtacagcacaaggttcctcgcagacagctcagggttgctctcttgc
tcagaagacatgtccattaggtactgggaccttgggagtttcaccaacactgtgttgtac
caaggacatgcctaccctgtgtgggacctggacattagcccgtacagcctgtacttcgcc
agtggttctcatgaccgcactgcaaggctctggtcatttgatcggacgtaccctctgaga
atatacgcaggacacctggcagatgtggactgcgtcaaattccaccctaattcaaactac
ttagctacaggctctactgacaaaactgttcgactgtggagtgctcagcaggggaactca
gtgaggctcttcacaggccaccgcggccctgtgctctctcttgccttctctcccaatggt
aagtacttggcgtccgctggcgaggaccagcgtttgaagctatgggacttggcatctggg
accctttacaaagaactgagaggccacacagacaatattacgagcctcaccttcagtcca
gacagtagcctgattgcctctgcatccatggacaactccgtgcgcgtctgggacattaga
aacacatactgcagcgcacctactgacggctcctccagcgaacttgtgggtgtgtatact
gggcagatgagcaatgtactgagtgtgcagttcatggcctgtaacctccttctagtgacg
ggaatcacacaagaaaatcaggaacattaa
DBGET
integrated database retrieval system
