Sorex fumeus (smoky shrew): 130038968
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Entry
130038968 CDS
T10594
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03015
mRNA surveillance pathway
sfum03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130038968 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130038968 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130038968 (CPSF6)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
130038968 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
130038968
NCBI-ProteinID:
XP_055986770
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNR
NRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSGSRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRD
RERDREREYRHR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggaccacatagacatttacgccgatgtgggcgaggagttcaaccag
gaagctgaatatggtgggcatgatcaaatagatttgtatgatgatgtcatctctccatct
gctaataatggagatgccccagaagaccgggattacatggatactctcccgccaacggtt
ggagacgatgtgggtaaaggagcagcacccaatgttgtctacacgtatactggaaagagg
attgcattgtatattggaaatctaacatggtggacaacagatgaagacttaactgaagca
gttcattctttgggagtaaatgatattttggagataaaattttttgaaaatcgagcaaat
ggccaatcaaaggggtttgcccttgttggtgttggatctgaagcatcctcaaaaaagtta
atggatctgttgcctaaaagagaactacacggtcaaaatcctgtcgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggaggcagttcacgtgcagcatttccacaaggt
ggtagaggacggggccgtttcccaggggctgttcccggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccatttccagctggacagactccaccacgtccacct
ttaggtcctccaggcccaccaggtccacctggccctccacctcctggtcaggttctgccg
cctcctttagctgggcctcctaatcgaggagatcgccctccaccaccagttctttttcct
ggacaaccgtttgggcagcctccattgggtccgcttcctcctggtcctccacctccagtt
ccaggctacggcccccctcctggcccaccacctccacaacagggaccacctccacctcca
ggcccctttccacctcgcccaccaggccctcttgggccacccctcacacttgctcctcct
ccgcatcttcccggaccacctccaggtgctccaccacccgcaccacatgtgaacccggct
ttcttccctccaccaactaacagcggcatgcctacatcagatagtcggggtccaccaccc
actgatccatacggtcggcctccaccatatgataggggtgactatgggcctccaggaagg
gaaatggatactgcaagaacgccattgagcgaagctgagtttgaagaaatcatgaataga
aatagggcaatctcaagcagtgctatttcaagagctgtatctgatgccagtgctggtgat
tatgggagtgctattgagacattggtgactgcaatttctttaattaaacaatccaaagta
tctgctgatgatcgttgcaaagttcttattagctctttgcaagattgccttcatggaatt
gaatccaaatcttatggttctggatcaagaagacgtgaacgatcaagagagagggaccat
agtagatcacgagaaaagagtcggcgtcataaatctcgaagtagagatcgccatgatgat
tattatagggagagaagtagagaacgcgagagacatcgggatcgagatcgggaccgagat
cgagagcgtgaccgagagcgggaatatcgtcatcgttag
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