Sorex fumeus (smoky shrew): 130038993
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Entry
130038993 CDS
T10594
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04659
Th17 cell differentiation
sfum04710
Circadian rhythm
sfum05017
Spinocerebellar ataxia
sfum05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
130038993 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
130038993 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
130038993 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
130038993 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130038993 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sfum03310
]
130038993 (RORA)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
130038993 (RORA)
Nuclear receptors [BR:
sfum03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
130038993 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
130038993
NCBI-ProteinID:
XP_055986813
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MESAPAAPEPAASEPGSSGAADAPPNPEPARRSEAPAAARRQSYAGAHRGLPMSMSIERT
ERRGHDAGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS
CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQ
QRDHPQQPGEAEPLTPTYSISANGLTELHDELSTYIDGHTPEGSKADSAVSSFYLDIQPS
PDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETC
QYLREELQQITWQTFLQEEIENYQNKQREVMWQLCSIKITEAIQYVVEFAKRIDGFMELC
QNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPEVFKSLGCEDFISFVFEFGK
SLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILT
KLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggagtcggcgccggcagcccccgagcccgccgccagcgagccgggcagcagcggcgcc
gccgacgccccgccgaaccccgagccggcccgcaggagcgaggcgcccgccgcggcgcgc
aggcagagctacgcgggcgcccaccgaggcttacccatgtcaatgtccattgagaggact
gagagaagggggcatgatgcaggtatctccgtaacgaagaagacgcatacatctcaaatt
gaaattattccatgcaagatctgtggagacaaatcatcaggaatccattatggtgtcatt
acatgtgaaggctgcaagggctttttcagaagaagtcagcaaagcaatgccacctactcc
tgtcctcgtcagaagaactgtttgattgatcgaaccagccggaaccgttgtcagcactgt
cggttacagaaatgccttgccgtggggatgtctcgggatgctgtgaagtttggccggatg
tccaagaagcagagagacagcctgtacgcagaggtgcagaagcaccggctgcagcagcag
cagcgagaccacccgcagcagccaggggaggctgagccactgacgcccacctacagcatc
tccgccaatgggctcacggagctgcatgacgagctgagcacctacatcgacgggcacacc
ccggagggcagcaaggccgactctgccgtcagcagcttctacctggacatacagccctcc
ccggaccagtcgggcctggacatcaacgggatcaaaccggaacccatctgcgactacacg
cccgcatcaggcttcttcccctactgctccttcactaacggagagacctccccaacggtg
tccatggcagagctagaacaccttgcacagaatatatctaaatcacacctggaaacttgc
cagtacttgagagaagagctccagcagatcacgtggcagactttccttcaggaggagatt
gagaactatcaaaacaagcagcgggaggtgatgtggcagctgtgctccatcaagatcacg
gaagcgatacagtacgtggtggaatttgccaagcgcattgatgggtttatggagctgtgt
caaaacgatcaaattgtgcttctcaaagcaggttctctggaggtggtgtttattagaatg
tgccgtgcctttgactctcagaataacaccgtgtactttgatgggaaatatgctagtcct
gaagtcttcaaatccttaggttgtgaagacttcattagctttgtatttgaatttggcaag
agtttatgttctatgcacctgactgaagatgaaattgcattattttctgcatttgtactg
atgtcagcagatcgctcatggctgcaagaaaaggttaagatagaaaaactgcaacagaaa
attcaactagctcttcaacacgtcctacagaagaatcaccgagaagacggaatactaacg
aagttaatatgcaaggtgtctacattaagagccttatgtggacgacatacagaaaagctc
atggcatttaaagcaatatacccagacattgtgcgactccattttcctccattatacaag
gaattgttcacttcagaatttgagccagcaatgcaaatcgatgggtaa
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