Sorex fumeus (smoky shrew): 130039516
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Entry
130039516 CDS
T10594
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfum03009
]
130039516 (DDX55)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130039516 (DDX55)
Ribosome biogenesis [BR:
sfum03009
]
Eukaryotic type
Pre-60S particles
Helicases
130039516 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130039516
NCBI-ProteinID:
XP_055987359
LinkDB
All DBs
Position
Unknown
AA seq
598 aa
AA seq
DB search
MEHVTEGAWESLPVALHPRVLGALRELGFPCMTPVQAATIPLFMKNKDVAAEAVTGSGKT
LAFVIPILEILLRREEKLKKSQVGAIIITPTRELATQIHEVLAHFTKHFPQLSQILWIGG
TNPAEDVARFKEHGGHIVVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMG
FEASINTILELLPRQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPS
RLDNYYMVCKAHEKFNQLVHFLRNHKREKHLVFFSTCACVEYYGKALEGLVKNVRILCIH
GKMKYRRNKIFMEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTA
RIGHRGSALVFLLPMEESYVSFLAINQKCPLQEMAQQQQPADVLPKLQAMACADRAVFEK
GVRAFVSFVQAYAKHECGLIFRLKDLDLASLARGFALLRMPRMPELRGKQFPDFVPVDID
TDTIPFKDKAREKQRQKLLQEQREKTETEGKRKFIKNKAWSKQKAKKEKRKKINKKRNRE
EGSDMDDEDMEELLNDTRLLRKFKKGRITEAEFEKGLLSGGKGSCTPVGCGTSDLEGE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtcacggagggggcctgggagtcgctgcccgtagcgctgcacccacgggtg
ctgggcgcgctgcgcgagctgggcttcccgtgcatgacgccggtgcaggcagcgaccatc
cccctgtttatgaagaacaaggacgtggccgcggaggcggtcacgggcagtggcaaaacg
ctggccttcgtcatccccatcctggagatccttctgaggcgggaggagaagctaaagaag
agtcaggtgggggctatcatcatcacgcccacgcgggagctggccacgcagatccatgag
gtcctggcacacttcaccaagcacttcccacagctcagccagattctctggatcggaggc
accaaccctgctgaggatgtggccagattcaaggagcatgggggccacatcgtggtggcc
actccaggccgcctggaggacatgttccgcaggaaggccgagggcctggacctggccagc
tgcgtgcggtccctggaggtgctggtgctggacgaagccgacagactcctggacatgggc
ttcgaggcgagcataaacaccatcctggagctgctccccaggcagaggagaacgggcctt
ttctcggccacgcagacgcaggaggtggagaacctggtgcgtgccgggctccggaacccc
gtccgcatctcagtgaaggagaagggcgtggcggccagcagtacccagaaaaccccatcc
cgcctggacaactactacatggtctgcaaggcgcatgagaaatttaatcagttggtacac
tttcttcgaaatcataagcgtgaaaaacacctggtcttcttcagcacctgcgcgtgtgtc
gagtactacgggaaggccctggaggggctggtgaagaacgtgcggatcctgtgcatccac
ggcaagatgaagtacaggcgcaacaagatcttcatggagttccgccagctgcagagtggg
attcttgtgtgcacggatgtgatggcccggggcatcgatattcctgaggtgaactgggtt
ctgcagtacgacccccctagcagtgccagtgcctttgtacatcgctgtggccgcacggcc
cgcatcggccacagaggcagcgcgctggtgttcctcctccccatggaagagtcctacgtc
agcttcctggccatcaaccaaaaatgccccctgcaggagatggcgcagcagcagcaaccg
gccgatgtccttccgaagctgcaggccatggcgtgtgcggatagggccgtgttcgagaag
ggtgtgagggccttcgtgtccttcgtgcaggcctatgcgaagcacgagtgtggcctcatc
ttccggctgaaggatcttgacctggccagccttgcccgaggcttcgccctgctgaggatg
cccaggatgccagagctgagggggaagcagttccccgacttcgtgcccgtggacattgat
acagacaccatcccattcaaagacaaagccagagagaagcagaggcagaaactgttgcaa
gagcagagagagaaaacagaaactgaagggaaacgaaaattcatcaaaaataaagcgtgg
tcaaaacagaaggccaagaaggaaaagaggaaaaaaataaacaagaaaaggaaccgggag
gagggctcagacatggatgatgaggacatggaggaacttctcaacgacaccaggctcttg
aggaagttcaagaaaggcagaatcacagaggcagagtttgagaagggactgctgagtggt
ggcaaaggcagctgcacacctgtgggctgtgggacctcagacttggagggcgaatga
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