Sorex fumeus (smoky shrew): 130039762
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Entry
130039762 CDS
T10594
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03008
Ribosome biogenesis in eukaryotes
sfum03013
Nucleocytoplasmic transport
sfum03015
mRNA surveillance pathway
sfum05014
Amyotrophic lateral sclerosis
sfum05164
Influenza A
sfum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130039762 (NXF1)
03015 mRNA surveillance pathway
130039762 (NXF1)
03008 Ribosome biogenesis in eukaryotes
130039762 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
130039762 (NXF1)
05168 Herpes simplex virus 1 infection
130039762 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
130039762 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130039762 (NXF1)
03009 Ribosome biogenesis [BR:
sfum03009
]
130039762 (NXF1)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130039762 (NXF1)
mRNA cycle factors
Stress granule specific factors
130039762 (NXF1)
Ribosome biogenesis [BR:
sfum03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
130039762 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
130039762
NCBI-ProteinID:
XP_055987629
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MADEGKPYNEHDDRITFHQRRKKGRGPFRWKYGDGNRRSGRGGAGVRTPRLEDEDRDVAM
SDAQDGPRVRYNPYTARPNRRGGDAWHDRDRIHVTVRRDRAPPDRGAAGTSQEGVSRNWF
KITIPYGRKYDKSWLLSVIQSKCSVPFTPVEFHYENTRAQFFVEDASTASALKAINYKIS
DRENRRISIIINPSFPPQTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDADLVA
QNIDVVLNRKSCMAATLRIIEENIPELLSLNMSNNRLYRLDEMASIVQKAPNLKILNLSG
NELKSERELDKIKGLKLEELWLDGNPLCDSFQDQSTYISAVRERFPKLLRLDGHELPPPI
AFDVEAPTALPPCKGSYFGTEALKNLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI
PFTPQNPARSNLAEYFKDSRNVKKLKDPTMRFRLLKHTRLNVVAFLNELPKTQHDINSFV
VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS
PDESQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA
QAFTLLKAKDKIPEVAFMK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagccgtacaacgagcatgatgaccgcattaccttccatcagagg
aggaagaagggccgaggtcctttccggtggaagtatggggatgggaaccgtcggtctgga
agaggaggtgccggcgttcggacaccccgccttgaggacgaggacagagatgtggcaatg
agtgatgcccaggacggtccccgagtgcgatacaacccctataccgcgcgacccaaccgt
cggggaggcgacgcctggcacgatcgggaccgtattcacgtcactgtgcggagggacaga
gcgcctcccgacagaggcgccgctggcaccagccaggaaggggtgtcaaggaactggttc
aagattacaattccttacggcaggaaatacgataagtcgtggctcctgagtgtgattcag
agcaaatgcagcgtccctttcacccccgttgagtttcactatgaaaacacccgggcccag
ttttttgttgaggatgccagtaccgcctctgcgctgaaggccatcaactataagatctcc
gatcgggagaatcgtaggatatccatcatcatcaacccctcgtttccgccccagacggtc
cagaatgagctgaagcctgaacaggtggagcagctaaagctgatcatgagcaaaagatat
gatggctcccaacaagcgctggacctcaaaggcctccgtacagacgcagacttggtggcc
cagaacatagacgttgtcctgaaccggaaaagttgcatggcggccaccctgcgaatcatc
gaagagaacatccccgagctcttatccttgaacatgagcaacaatcggctctaccggctg
gacgaaatggccagcatcgtgcagaaggcccccaacctgaagatcctgaacctctccgga
aacgagctgaagtccgaacgggagttggacaagatcaaagggctcaagctggaggagctc
tggctggacgggaacccgctgtgcgactccttccaagaccagtccacctacattagcgcc
gttcgcgaacgatttcccaaattactgcgcctggatggccacgagttacccccgcctatt
gcctttgacgtggaggcccccacagccctgccgccctgcaagggaagctactttggcacc
gaggccctgaagaatctagtgctgcacttcttacagcagtactatgcaatctatgactct
ggcgaccggcagggacttctggacgcctaccacgacggggcgtgctgctccctgagtatc
cccttcaccccccagaaccccgcacgaagcaacctggccgagtacttcaaggatagcagg
aatgtgaagaagctgaaagaccccaccatgcggttccgcctgctgaagcacacgcgtctg
aacgtcgttgccttcctcaacgagctgcccaaaactcagcacgacattaattccttcgtg
gtagacataagtgcccagactagcacgctgctgtgtttctccgtcaatggcgtctttaag
gaagtggacggaaagtcccgggattccttgcgagccttcactcggaccttcattgctgtt
cctgccagcaattcagggctgtgcatagtgaatgacgagctgtttgtgcggaacgccagc
cctgatgagagccaaagagccttcgccatgcctgcacccacgccttcctccagcccagtg
cccaccctctccccggagcagcaggaaatgctgcaggccttttcgacgcagtctggcatg
aacctcgagtggtcccagaaatgtctgcaggacaacaactgggactataccagatctgcc
caggccttcactcttctcaaggccaaggacaagattcctgaagtggctttcatgaagtga
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integrated database retrieval system
