Sorex fumeus (smoky shrew): 130039878
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Entry
130039878 CDS
T10594
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04120
Ubiquitin mediated proteolysis
sfum04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130039878 (SYVN1)
04120 Ubiquitin mediated proteolysis
130039878 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfum04121
]
130039878 (SYVN1)
Enzymes [BR:
sfum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130039878 (SYVN1)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130039878 (SYVN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-RING-like
zf-ANAPC11
zf-HC5HC2H
zf-Nse
zf-C3H2C3
Endonuclease_7
Prok-RING_4
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
130039878
NCBI-ProteinID:
XP_055987803
LinkDB
All DBs
Position
Unknown
AA seq
607 aa
AA seq
DB search
MFRTAVVMAASMALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDYMERSPNISWLFHCRIVSLMCLLGVLDFFFVSHAYHSILTRGASVQLVFGFEYAI
LMTMVLTIFIKYVLHSVDLQSDNPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQAMDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPTQSPAPPEPADQGPPPAAHPP
PLLPQPPNFPHGLLPPFPPGMFPLWPPMAPFPPVPPPPSSGEAAAPSTSAGTVSRPAGVA
ASPPVPGSAPGAEAAAAAAGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALE
GHERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPASSVSPAEEPAPTAVTP
AASTSTPSSEAAPSAPGASSPAPEPEKPPAPESVGAAGAEEQLEDGEPDAAELRRRRLQK
LESPVTH
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgttccgcaccgccgtggtgatggcggccagcatggcactgaccggggccgtggtggcg
cacgcctactacctcaagcaccagttctaccccactgtggtgtacctgaccaagtccagc
cccagcatggccgtcctgtacatccaggccttcgtgctggtcttcctcctgggcaaggtg
atgggaaaggtgttcttcgggcagctgcgggcggcagagatggagcaccttctggaacgt
tcctggtatgcggtcaccgagacgtgtctggccttcaccgtctttcgggacgacttcagc
ccccgcttcgtggcgctcttcaccctcctcctcttcctcaagtgttttcactggttggcg
gaggaccgtgtggactacatggagcgcagccccaacatctcctggctcttccactgccgc
atcgtgtccctcatgtgcctgctgggcgtcctggacttcttcttcgtcagccacgcctac
cacagcatcctgacgcggggcgcctccgtgcagctggtgtttggctttgagtacgccatc
ctgatgaccatggtgcttaccatcttcatcaagtatgtgctgcacagcgtggacctgcag
agcgacaacccctgggacaacaaggccgtgtacatgctgtacacggagctgttcacaggc
ttcatcaaggtcttgctgtacatggccttcatgaccatcatgatcaaggtgcacacgttc
ccgctcttcgccatccggcccatgtacctggccatgaggcagttcaagaaagctgtgacg
gacgccatcatgtcacgccgggccattcgcaacatgaacacgctgtaccccgacgccacc
cccgaggacctgcaggccatggacaacgtctgcatcatctgccgggaggagatggtgacc
ggcgccaagaggctgccctgcaaccacatcttccacaccagctgcctgcgctcctggttc
cagcggcagcaaacctgtcccacctgccgcatggacgtcctgcgggcctcactgcccacc
cagtcgccagcaccccccgaacctgcagaccaggggccgcctcctgccgcccaccccccg
ccccttctgccccagccccccaattttccccacggcctcctgccccccttccctccgggc
atgtttccgctgtggccccccatggctcccttcccacctgtcccgcctcccccgagctct
ggagaggccgcggccccgtccaccagtgcaggaacagtctctcggcccgcaggcgtggct
gcgtcacccccggtccccggctctgcacccggcgccgaggcggccgctgctgccgccggc
ttcccgttcccgcctccctggatgggcatgcccctgccgccgcccttcgccttccccccg
atgcccgtgccccccgccggcttcgccgggctgacccccgaggagctgcgcgcgctggaa
ggccacgagcggcagcacctggaggcgcggctgcagagtctgcgcaacatccacacgctg
ctggacgccgccatgctgcagatcaaccagtacctcaccgtgctcgcctccctggggccg
ccccggcccgccagctctgtgtcccctgctgaagagcctgcccccaccgctgtcaccccg
gcggcctccaccagcacccccagctccgaggcggccccctcagccccaggagcctcctcc
ccagccccagaacccgaaaagcctccagccccagagtcggtgggcgctgccggcgccgag
gagcagctggaggacggagagccggacgccgccgagctccgccgccgccgcctgcagaag
ctcgagtccccggtgacacactga
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