KEGG   Sorex fumeus (smoky shrew): 130040039
Entry
130040039         CDS       T10594                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
sfum  Sorex fumeus (smoky shrew)
Pathway
sfum03420  Nucleotide excision repair
sfum04120  Ubiquitin mediated proteolysis
sfum05161  Hepatitis B
sfum05170  Human immunodeficiency virus 1 infection
sfum05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:sfum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130040039 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    130040039 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    130040039 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    130040039 (DDB1)
   05161 Hepatitis B
    130040039 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sfum04121]
    130040039 (DDB1)
   03400 DNA repair and recombination proteins [BR:sfum03400]
    130040039 (DDB1)
Ubiquitin system [BR:sfum04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     130040039 (DDB1)
DNA repair and recombination proteins [BR:sfum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      130040039 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      130040039 (DDB1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_RIG_2nd Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 130040039
NCBI-ProteinID: XP_055988050
LinkDB
Position
Unknown
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPTRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSCQVVVAVGRALYYLQIHPQELRQVSHTEMEHEVAC
LDITPLGESNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSVETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcccagaagcccaccgccgtgaatggctgcgtgacc
ggacactttacttcggctgaagacttgaacctgttgattgccaaaaacacgagattagaa
atctatgtggtcaccgccgaggggcttcggcctgtcaaggaagtgggcatgtatgggaag
atcgctgttatggagcttttcaggcccaagggggagagcaaggaccttctgttcatcctg
acagccaagtacaatgcctgcatcctggagtacaaacagagtggcgagagcattgacatc
ataacacgagcccacggcaatgtccaggaccgaattggccgcccctcagagacgggcatt
atcggcatcatcgaccctgagtgccggatgattggcctgcgactctacgatggccttttc
aaggttattcctctagacagggacaataaagagctcaaggccttcaacatccgcctggag
gagttacatgtcatcgatgtcaagtttctctacggttgccaggcacctaccatctgcttc
gtctaccaggaccctcaggggcggcatgtcaaaacctatgaggtgtctctccgagagaag
gagttcaataagggcccttggaagcaggagaacgtggaggcagaggcctccatggtgatt
gcagttccagagccctttggaggggccatcatcattgggcaggaatccatcacctatcac
aatggtgacaaatacctggcaatcgcccctccgatcatcaagcaaagcacaattgtgtgt
cacaatcgcgtggaccccaacggctcccgctatctgctgggcgacatggaaggacggctc
ttcatgctgctgctggagaaggaggaacagatggacggcaccgtcaccctcaaggacctg
cgggtggaactcctcggagagacctcgattgctgagtgcttgacataccttgataacggt
gttgtgtttgtcgggtctcgcctcggggactcccagcttgtgaagctcaatgttgacagc
aatgaacaaggttcctacgtagtagccatggaaacctttaccaacttgggacccatcgtg
gacatgtgcgtggtggatctcgagaggcaggggcagggacagctggtcacttgctctggg
gctttcaaggaaggttccttgcggatcatccggaacggaattggaattcacgagcatgcc
agcattgacttaccaggcatcaaaggcctgtggccccttcggtctgatccgacccgggag
actgacgacactttggtgctctctttcgtgggccagacaagagtgctcatgctgaacgga
gaggaggtggaagagacggaactgatgggctttgtggatgaccagcagactttcttctgt
ggcaatgtggctcaccagcagcttatccagatcacgtcggcgtctgtgcggttggtctct
caagaacccaaggccctggtgagcgagtggaaagagccgcagggcaagaacatcagcgtg
gcgtcctgcaacagctgccaggtggtggtggccgtgggcagggcgctctactacctgcag
atccatcctcaggagctccggcaggtcagccacacggagatggagcacgaggtggcctgc
ttggacatcacccccttgggagagagcaatggcatgtcgcctctctgtgccatcggcctc
tggaccgacatctcggcccggattttgaagctgccctcctttgaactcttgcacaaggag
atgctcggtggagagatcatccctcggtccattttgatgaccaccttcgagagtagccac
tacctcctttgtgccttgggagatggggccctcttctacttcggactgagtgtggagaca
ggcctgttgagcgaccgcaagaaggtgactctgggcacccagcccaccgttctgagaacg
ttccgttctctttctaccaccaacgtctttgcttgctctgaccgccccactgtcatctac
agcagcaaccacaagttggtcttctccaacgtcaacctcaaggaagtcaactacatgtgc
cccctcaactccgatggctaccccgacagcctggccctggccaacaacagcaccctcacc
atcggcaccatcgacgagatccagaagctgcacatccgcacggttcccctctatgagtct
cccaggaagatctgctaccaggaagtgtcgcagtgctttggggtcctttccagccgcatt
gaggtccaggataccagtgggggcacgactgctctgaggcccagcgccagcacccaggcc
ctctccagcagcgtcagctccagcaagctcttctccagcagcaccgccccccacgagacc
tcctttggagaagaggtggaggtccacaacctgctcatcatcgaccagcacaccttcgaa
gtccttcacgcccaccagtttctgcagaacgagtatgccctcagcctggtttcctgcaag
ttgggcaaagaccccaacacctacttcatcgtgggcacagccatggtgtaccccgaggag
gcggagcccaagcagggccggattgtggtctttcagtactcggatggaaagctgcagacc
gtggccgagaaggaggtgaagggggccgtgtactcgatggtggagtttaatgggaagctg
ttagccagcatcaacagcacggtgcggctatacgagtggaccacggagaaggagctgcgc
accgagtgcaatcactacaacaacatcatggccctctacctgaagaccaagggcgacttc
atcctggtgggcgacctgatgcgctccgtgctgctgcttgcctacaagccgatggagggc
aacttcgaagagatcgcacgagactttaaccccaactggatgagcgctgtggaaatcttg
gatgatgacaatttcctgggggccgagaatgcgtttaacttgtttgtgtgtcagaaggac
agcgctgccaccaccgacgaggaacggcagcacctgcaggaagttgggcttttccacctg
ggcgagttcgtcaatgtcttctgccacggctctctggtcatgcagaatctgggcgagacg
tccacccccacccaaggctcggtgctctttggcacagtcaatggcatgatcgggctggtg
acctcactgtcggagagctggtacaacctcctgctggacatgcagaatcggctcaataaa
gtcatcaaaagcgtgggcaagatcgagcactccttctggagatccttccatactgagcgc
aagacggagccggccactggcttcatcgatggagacttgatcgagagtttcttggatatc
agccgccccaagatgcaggaggtggtggcaaacctgcagtacgacgacggcagcgggatg
aagcgtgaggccactgccgacgacctgatcaaggtggtggaggagctcacacggatccat
tag

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