Sorex fumeus (smoky shrew): 130040053
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Entry
130040053 CDS
T10594
Symbol
SF1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 1
KO
K13095
splicing factor 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130040053 (SF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130040053 (SF1)
Spliceosome [BR:
sfum03041
]
Complex A
Other components
Complex A specific factors
130040053 (SF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_5
zf-CCHC_3
KH_NusA_1st
Motif
Other DBs
NCBI-GeneID:
130040053
NCBI-ProteinID:
XP_055988067
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MATGANATPLGKLGPPGLPPLPGPKGGFEPGPPPAPGPGAGMLGPGPPPPPVGSVGALTA
AFPFAALPPPPPPPPPPPPQQPPPPPPSPGASYPPPPPPPPPPPLYQRVSPPQPPPPPQP
PRQDQQPGPAGGGGDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQL
QIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEM
VALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIM
IRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQ
NDLRKMQLRELARLNGTLREDDNRILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQR
PGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPAAPANNPPPP
SLMSTTQSRPPWMNSGPSDSRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHN
PNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMG
MMPPPPPPPSGQPPPPPSGPLPPWQQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTS
AGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGM
MYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFGMPPAPPPPPPQN
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccggagcgaacgccacgccgttgggtaagctgggcccccccggcctcccccca
cttcccgggcccaaaggaggcttcgagccggggccgccgcctgcccccgggcctggggcg
gggatgctggggcccgggccgccgcctccgcccgtgggctcggtgggggccctgaccgcg
gccttccccttcgcggcgctaccgccgccgccgccgccgccgccccccccgcctccccag
cagccgccgccgccgccgccctccccgggcgcctcgtacccgccgccgccgccgccccct
ccgccgccgccgctctaccagcgcgtgtcgccgccgcagccgccgccgccaccccagccg
ccgcgtcaggaccagcagccgggcccggccggcggcggaggagacttcccgagtaagaag
cggaagagaagccgctggaaccaagacacaatggaacagaagacagtgattccaggaatg
cccacagttatccctcctgggctcactcgggaacaagagagagcttatatagtgcaactg
cagatagaagacctgactcgtaaactgcgcacaggagacctgggcatcccccctaaccct
gaggacaggtccccttcccctgagcccatctacaatagcgaggggaagcggctcaacacc
cgagagttccgtacccgcaaaaagctcgaggaggagcggcacaacctcatcacggagatg
gttgcgctcaaccccgacttcaagccgcctgcagattacaaacccccagcgacacgtgtg
agtgacaaagtaatgatcccgcaggatgaatatccagaaatcaacttcgtgggcttgctc
atcgggcccagaggaaacaccttgaagaacatagagaaggagtgcaacgccaagatcatg
atccgggggaaagggtccgtgaaagaagggaaagtggggcgcaaagatggccagatgttg
ccgggggaagatgagccacttcatgccctggttactgccaacaccatggagaatgtgaag
aaagcagtagaacagatacgaaacattctaaagcaggggatcgagacccctgaggaccag
aacgatctacggaagatgcagcttcgggagctagctcgcttgaatgggacgctgcgggaa
gatgataacagaatcctgagaccctggcagagctctgagactcgcagcattaccaatact
acagtatgtactaagtgtggaggggctggccacatcgcttctgattgtaaattccaaagg
cctggagacccccagtcagctcaggataaagcacggatggataaagaatatttgtccctc
atggcagaactgggagaagcacctgtcccagcgtctgtgggctccacttctggccctgcc
accacacctctggccagtgcacctcgacctgctgctcctgccaacaaccctcctccaccg
tctctcatgtccaccacccagagccgcccaccgtggatgaattctggtccttccgacagt
cggccctaccacggcatgcatggaggtggtccaggggggcccggaggtggcccccacagc
ttcccacacccgttgcccagcctgaccggtgggcatggcggacatcccatgcagcacaac
cctaacggccccccgcccccgtggatgcagccaccgccaccgccgatgaaccagggcccc
cacccacctgggcaccatggccctcctccaatggatcagtacctgggaagtacgcctgtg
ggctctggggtctatcgcctgcatcaaggaaaaggtatgatgccgccgccgcctatgggc
atgatgccgccgccgccgccgccgcccagtgggcagcccccgcccccgccctctggcccg
cttcccccatggcagcagcagcagcagcagcagcctccgccgcccccaccgcccagcagc
agtatggcttccagtacccccttgccatggcagcaaaatacgacgactaccaccacgagc
gctggcacagggtccatcccgccatggcaacagcagcaggcggctgccgcagcttctcca
ggagcccctcagatgcaaggcaaccccactatggtgcccctgccccctggggtccagccg
cctctgccgcccggggcccccccccctccgccgcctccgccacctggttccgccggcatg
atgtatgccccgcccccccctcctccgcctcccatggacccttctaactttgtcaccatg
atgggcatgggggtggcgggcatgccgcccttcgggatgcctccagctcccccaccgcct
ccaccacagaactag
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