Sorex fumeus (smoky shrew): 130041324
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Entry
130041324 CDS
T10594
Symbol
RPAP1
Name
(RefSeq) RNA polymerase II-associated protein 1 isoform X1
KO
K20826
RNA polymerase II-associated protein 1
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130041324 (RPAP1)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
130041324 (RPAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
130041324
NCBI-ProteinID:
XP_055989382
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All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MLARPKPGEAEEDLLRFQRQFLAAGTAPAVQLVQKGSRCQGDALARDVVVLDDLPDVPPA
LVPAPAKRARPSATGSLPVFEDPEERLNRHDQHITAVLTKIIERDTSSVAVNLPVPSNVA
FPPVFHRSQGRQGMPTTSGQRSIFAQEIAARRASEARPLSPRDAKSTLHPPQGAVTCEEA
PPGEQGCPHPGGSPIFQGPHLVTGTGLRGQEAKQEAQTIHEENVARLQAMAPEEILQEQR
RLLAQLDPGLVAFLKSRSCSKEQAGERAREEQRLEGASTTATVEDSVVPASASEPRREEE
LQPSTPAPALPVAPQKEWLHMDTVELDKLHWTQDLPPLRRKRTQERMQARFNLQGELLAP
DADLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVPQQRALALHVLAQVISRAQAGEFGD
RLVGSVLRLLLDAGFLFLLRFSLDDRVDGVIAAAVRALRALLVFPGDEELLDSAFSWYHG
ALVFPLIPSQEDQDAEDEDEEPPVEKTKKAPEESSRPPSDLARHDVIKGLLATNLLPRLR
YVLEVTCPAPSVVLDILAVLIRLARHSLESATRILECPRLMGTVVREFLPTSWAPREAGP
APSLHRVPCSSAMKLLRVLASAGRNIAVRLLSSFDLRSRLCRFLAEAPPELALPQEEAET
LSTEALRLWAVAASYGQAGDLYRELYPILVQVLQAVPRQLTTQPLRPLAMQHIASLLTAL
TQLTLATSASEPSRDDTTEVSPSAAPSSLLWTQVCGLQPLVEPCLRQALESLSRPDAWCA
LGPVPTACLLFLDAYYQAWSQQPSMCPGDWLQDIERLSDELLLPLLCQAPLGDLCQALRR
CSPLCNPQSCAPGPEMLLSLPSLGCAGGCPPLSLPGSASPFPFLTALLALCGTLTRIHKG
LCVQLASLLSTPGLQDYFQQCVAPMPAPQLTPFSAWALRHEYHLQYLVLNLAQRVATFQT
VPAPSAALLHSLAVALLSRLLPGNEHLAHELLRTCVFRPEFLPERASGGPEAADFSDQLS
LGSGQELGGGRGALLTQACQDLPSIRSCYLTHCSLARASLLASQALHRGQLQHVPSLLLP
VPKEPLLPTDWPFLPLLHLYHQASDPRLGVPPSDTVGTAQRALQWVLVLESWRPRSLWAV
PPAARLARLMCVFLVDSELFREAPIQRLVAALVTQLCRPEVLPNLHLDCPLAGLASFPDL
YASLLDHFEAVSFGDHLFGTLVLLPLQRRFSVTLRLALFGEHVGALRALGLPLSQLPVPL
ENYTSPPEDSLALLQLYFRALVTGALRPCWCPILYTVAVAHVNSFIFSQDPKSSGEVKAV
RRSMLQKTWLLADEAPRQHLLLYKLPNSTCPDGFELYSQLPPVRQQYLQSLTSEMGQSGE
GQAPGGCSG
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaaggccaaagccaggcgaggctgaggaagacctgctgcgcttccagaggcag
ttcctggcggccggcacagccccggcagtgcagttggtgcagaaaggaagccggtgccag
ggagatgcacttgctcgggatgtggtggtgctggacgatctccctgatgtgcctccagct
ttggtacctgctcctgcaaagagagccagacccagtgccacgggttccctgcctgtcttt
gaggaccctgaggagaggctgaacaggcatgatcagcacatcactgctgtcttgacgaag
attattgaacgagacaccagctcagtggccgtgaatctgcctgtacctagtaatgtggct
ttccctcctgtgttccatcgctcacagggaaggcaggggatgccaacaacatctggtcag
aggagcatctttgctcaggaaattgcagcaagaagagcgtctgaagccagaccactttcc
ccaagagatgccaaatccaccttacacccaccacagggtgctgtgacctgcgaagaagct
cctccaggagagcagggctgcccacatccgggaggcagccccatcttccaaggaccccac
ctggttacaggcacggggctccggggccaggaggccaagcaggaggcccagaccatccac
gaggagaatgtagcacggctccaagccatggcacccgaggagatcctgcaggaacagagg
cgcttactggcacagcttgatccaggcctggtcgccttcctgaagtctcgtagctgcagc
aaggagcaagcaggagagagggcccgggaggagcagaggctggaaggagcctcgaccaca
gccactgtggaagattctgtcgtgccagcctctgcctcagagcccaggagggaagaggaa
ctgcagccgagcaccccagctcctgcactgcccgtggccccccaaaaggagtggctgcac
atggacacagtggagctggacaagctgcactggacccaggacctgcccccactccggcgg
aagcggacccaggagcgcatgcaggcccggttcaacctccagggagagctgctggccccc
gatgctgacctgcccacccacctgggcctgcaccaccatggggaggaggcagagagagcg
gggtactccctgcaggagctcttccacctgacacgcagccaggtgccccagcagagagcc
ctggcgctgcatgtgctggcccaggtcatcagcagggcccaggccggcgagtttggggac
cgcctggtgggcagtgtcttgcgcctccttttggatgctggcttccttttcctgctgcgc
ttctccctggatgaccgggtggacggggtcatcgccgctgctgttcgtgctctccgggct
ctgctggtgtttcctggagacgaggagctcctggacagtgccttctcctggtaccacgga
gcactagtgttcccgctgatccccagccaagaggaccaggatgctgaggatgaggatgaa
gagccgccagtggaaaagacaaagaaggccccggaggagagttcccggcctccgtctgac
ctggcccggcacgacgtcatcaaggggctgctggccaccaacctgctgccccggctgcgc
tacgtgctggaggtgacctgtccagcgccctctgtggtcctcgacatcctggccgtgctc
attcgcctggcacggcattctctggagtcagccacgaggatcctggagtgccctcggttg
atggggaccgtggtgcgagagtttctacccactagctgggcacccagggaggccgggcct
gcccccagcctccaccgggtgccctgttcgtccgccatgaagctgctccgtgtcctggcc
tcggctggcaggaacatcgctgtgcgactgctgagcagttttgatctccggagccgtctg
tgccgcttcctggccgaagcacccccggaactggccctgccccaggaagaggcggagacc
ctgagcaccgaggccctccggctgtgggcagtggccgcctcctacggtcaggccggagac
ctgtacagggagctctaccccatcctggtgcaggtgctacaggctgtgccgcgccagctg
accacccagcctctgcggcccctcgccatgcagcatattgcctcgctgctcaccgccctc
acccagctgaccctggccaccagtgcctccgaacccagcagggatgacaccaccgaggtc
agcccatcggccgccccttcctcgctgctctggacgcaggtgtgcgggctccagcctctg
gtggagccatgtctcagacaggccttggagtcgctgtccagacctgacgcatggtgcgca
ctgggcccggtgcccaccgcctgcctgctcttcctggacgcctattaccaggcctggagc
cagcagcccagcatgtgccccggtgattggcttcaggacatagagcgcctttcggacgag
ctgctgctgcccctgctgtgccaggcccctctgggtgacctgtgccaggctcttcggcgc
tgctcccctctctgcaacccacagtcctgtgcgccaggccccgagatgctcctgagcctc
ccctccctgggctgtgccggaggctgcccacccctcagcctgccaggctccgcctcgcca
ttcccgttcctcacggccctcctggccctctgcggcaccctgacccgcatccacaagggg
ctgtgtgtccagctggcttccctactatccacccctggactccaggactacttccagcag
tgtgtggctcccatgcctgccccccagctcacccccttctcggcgtgggcactgcgccac
gagtaccacctgcagtacttggtgctcaacctggcccagcgtgtggccacattccagacg
gtgcctgcgcccagtgccgccctcctccacagcctggccgtcgccctgctgagccgcctg
ctgcccgggaatgagcacctcgcccacgagctgctgcggacctgcgtgttccggcccgag
ttcctcccggagagagcatcgggcggtccggaggcagctgacttctccgaccaactctcc
ttggggagcggccaggaactggggggtgggcgtggggccctgctcacccaggcctgccag
gacctccccagcatccgcagctgctacctcacccactgctccctggccagagccagcctg
ctggcctcccaggccctccaccgcgggcagctgcagcatgtgcctagcctgctgctccca
gtgcccaaggagccactgctgcccaccgactggcctttcctgcccctgcttcacctctac
caccaggcctcagacccccgcctgggggtccctccttccgacactgtgggcactgcccag
cgggccctgcagtgggtgcttgtcctggagagctggcgccctcgcagcctctgggccgtg
cctcctgctgcccgcctggcacggctcatgtgtgtgttcctggtggacagtgagctgttc
cgggaggcccccatacagcgcctggtggcagccctcgtgactcagctctgccggccagaa
gtcctgccaaatctccacctagactgccccctcgccggcctggcatcttttcctgacctc
tatgccagcctgctggatcactttgaggccgtgtcgtttggggatcacctcttcgggaca
ctggtcctccttcccctgcagcgtcggttcagcgttaccttgcgcctcgccctctttggc
gagcacgtgggagccttgagagccctaggcctgcctctgtcacagttgcctgtgcccctg
gagaactacaccagcccccctgaggacagcctggccctcctgcagctctacttccgagcc
ctggtaacaggcgcgctccggccgtgctggtgccccatactctacacagtggccgtggct
catgtcaacagcttcatcttctctcaggaccccaagagttcgggtgaggtgaaggccgtc
cgcaggagcatgctgcagaaaacgtggctgctggctgatgaggcaccccggcagcacctc
ctgctctacaagctccctaattccacctgccccgatggctttgagctctactcgcagctg
ccccctgtgcggcagcagtaccttcagagcctcacctcagagatgggccagagcggggag
ggacaggcccccgggggctgctcggggtga
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