Sorex fumeus (smoky shrew): 130041544
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Entry
130041544 CDS
T10594
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03013
Nucleocytoplasmic transport
sfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130041544 (PNN)
03015 mRNA surveillance pathway
130041544 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130041544 (PNN)
03041 Spliceosome [BR:
sfum03041
]
130041544 (PNN)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130041544 (PNN)
Spliceosome [BR:
sfum03041
]
Complex C
Other components
EJC/TREX
130041544 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
130041544
NCBI-ProteinID:
XP_055989763
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MAVAVRTLQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPH
LFYIPGRMCPATQKLIEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRN
EEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEIGIIHSDAEKEQEEEEQKQ
EMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVESVKNVIAEQEVMETNQVESVEPSENE
TSKELEPEMEFEVEPDKECKSLSPAKENSSVLETETEPEDKEEKESEPQPEPLAQSQTQP
QPLAQSQPQTQPQPQPQPQPQSQPQSQSQTVLQPQPVSQPETLPLAVLQPPPQVIPEQGH
LLPERKELPVESMKLAEVTVEPVLTAHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSS
SSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSSTSSSESRSRSRGRGHNR
DRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSS
RSERDRKSDRKDKRR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgcagtgagaactttgcaggagcagctagaaaaggccaaagagagcctcaag
aacgtggatgagaacatccgcaagctcactgggcgggacccgaacgatgtgaggcccatc
caagccaggttgctggccctttccggtcctggtggaggtcggggacgtggtagtttattg
ctgaggcgtggattctcagatagtggaggaggacccccagccaaacagagagaccttgaa
ggggcagtcagtaggctgggtggggagcgtcggactcggagagaatcacgccaagaaagc
gacccagaggatgatgatgttaagaagccagctttgcagtcttcagttgtagctacctcc
aaagaacgcacacgtagagaccttatccaggatcaaaatatggatgaaaagggaaagcaa
aggaaccggcgaatatttggcttgttgatgggcacccttcaaaagtttaaacaggaatcc
actgttgctactgaaaggcaaaagaggcgacaggagattgaacagaaacttgaagtgcag
gcagaggaagaaagaaagcaggttgaaaatgagaggagagaactatttgaggagaggcgt
gctaaacagacagaattgcggcttttggaacagaaggttgagcttgcacagctgcaagaa
gaatggaatgagcataatgccaaaataattaaatatataagaactaagacaaagccccat
ttattctatattcctggaagaatgtgtccagctacccaaaaactaatagaagagtcacag
agaaaaatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaataaataaa
atggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtgcgtaat
gaagaacagaaggcggaacaagaagagggtaaggtggctcagcgagaggaagagttggag
gagacaggtaatcagcacaatgatgtagaaatagaggaagcaggagaggaagaggagaag
gaaataggtataattcatagtgatgcagagaaagaacaggaggaggaggaacaaaagcag
gaaatggaggttaagatggaagaggaaactgaggtaagggaaagtgaaaagcagcaggat
agtcagcctgaagaagttatggatgtactagagatggtggagagtgtcaaaaatgtaatt
gctgagcaagaggtaatggaaaccaatcaagttgaaagtgtagaaccttcagaaaatgaa
actagtaaagaattggagccagaaatggaatttgaagttgagccagataaagaatgtaaa
tctctttctcctgcgaaagagaattccagtgttctggaaacggaaactgagcctgaggac
aaagaagagaaagaatctgagccccaacctgagcctttggctcagtcccagactcagcct
cagcctctggctcagtcccagccccaaactcaacctcaacctcagcctcagcctcagcct
caatctcagccccagtctcagtcccaaacagtacttcagccccaacctgtctctcagcct
gagactttgccattagctgttttacagccaccacctcaggttattccggagcaagggcac
ttactacctgagaggaaagagttacctgtagaatcaatgaaactggctgaggtgacggta
gagccagtcttgacagcacatccagagagcaagagcaaaaccaaaactaggagcaggagt
agaggtcgagctagaaataaaacaagcaagagtagaagtcgaagcagtagcagtagtagt
tctagtagtagttcgaccagtagcagcagtggaagtagttcgagcagtggtagtagtagt
agtcgaagtagctccagtagcagctccagtacaagtggcagcagcagcagagatagcagc
agcagcagcactagtagtagtgagagtcgaagtcggagtaggggccgggggcataataga
gacagaaagcacagaaggagtgtggatcggaagagaagggatacttcaggactagaaaga
agtcacaaatcttcaaaaggtggtagtagtagagatacaaaaggatcaaaggataagaat
tcccgatccgacagaaagaggtctatttcagagagtagtcgatcaggcaaaagatcttca
agaagtgaaagagaccgaaaatcagacaggaaagacaaaaggcgttaa
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