Sorex fumeus (smoky shrew): 130041595
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Entry
130041595 CDS
T10594
Symbol
WDHD1
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1
KO
K11274
chromosome transmission fidelity protein 4
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sfum03036
]
130041595 (WDHD1)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
130041595 (WDHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Mcl1_mid
Beta-prop_THOC3
Beta-prop_WDR5
Ctf4_C
WD40
HMG_WDHD1
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
EIF3I
Beta-prop_WDR3_2nd
WDR55
eIF2A
WD40_Gbeta
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_Vps41
HMG_box
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_2nd
Tricorn_2nd
Beta-prop_TEP1_2nd
Beta-prop_Nup120_160
Beta-prop_WDR75_1st
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
130041595
NCBI-ProteinID:
XP_055989838
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MPATQKPMRYGHTEGHTDVCFDESGSYIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSC
ALKNGKLVTAVSNNTIQVHTFPEGIPDGLLTRFTTNANHVVYNGDGTKIAAGSSDFLVKV
VDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQTLDQTCAISWPLLQKC
NDVVNAKSICRLAWQPKSGKFLAVPVEKSVKLYRRETWSNQFDLSDNFISQALNIVTWSP
CGKYLAAGSINGLIIVWNVETRDCLERVKHEKGYAICGLAWHPTCDQIAYTDAEGNLGLL
ENVCDFIGKTANSEVSNRVEKDYNDLFDGEDSSNAGDFLNDNTMKNPSFSKGIINDEDDD
DLMKMSGGLRQRSHVLEDDENSVDLTMLKTGSKLLRGEEEDDQAATIRSPPLVISQRPSY
DGPIPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSVHHSTHL
SNTMNYTVADLSHEAILFACESTDEQASKLHCLHFSSWDSSKEWIVDMPQNEDIEAICLG
QGWAAAATNALLLRLFTIGGVQKEIFSLPGSVVSMAGHGEQLLIVYHRGTGFDGDQCLGV
QLLELGKKKKQILHGEPLPLTRKSYLVWLGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPV
CNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFQLPYCQISTE
KGQMEEQFWHSVMFHNYLDYLAKNGYEYDESSKNKAVREQQELLMKMLALSCKLEREFRC
VELADLMTQNAVHLAIKYASRSRKLILAQRLSELAVEKAAELAATQVEEEEEEEDFRKKL
NAGYSNTNTEWSQPRVRNREEDDAAEEVREPDDTEEKPEPHRHGQNPFSKSKSSSELQAV
KSGAVTCSSQGRVNPFKVSVSPKEPAIPANSVRSTNILDNINKSSKKSSTLNRATSTEKS
PVIKPLIPKPKSKQVSATSFFQKKTSQVEKTEELREEIPKNSSPEISVMCSQNTENQRPK
TGFQMWLEENRSSILSDNPDFSDEADIIKEGMTRFRILTAGERKAWAAKAKGETADDGTE
AKKRKWLVDESHETENQKEKEKENLNLPKKHKPLDLTVNQKLSAFAFKQE
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccacgcagaagccgatgaggtacggccatactgagggacacacggatgtctgt
tttgatgaatccgggagttacattgtaacatgtggaagtgatggtgatgtgaggatttgg
gaagacttggatgatgatgatcctaagtccattaatgttggagaaaaggcatattcatgt
gctttgaagaatggaaaattggttactgcagtatctaacaatactattcaagtacacaca
tttcctgaaggaattccagatggcttattgactcgcttcaccacaaacgcaaatcatgtt
gtctataacggagatggtacaaaaatcgctgctggatctagtgattttcttgtcaaagtt
gtggatgtgatggattgcagtcaacagaaaacatttcgaggacatgatgctcctgtttta
agtctttcctttgatcctaaagacatttttctggcatcagctagttgtgatggatctgtt
cgagtgtggcaaactttagatcagacatgtgctattagttggccattgctacaaaaatgc
aatgatgtggtaaatgcaaaatcaatctgtagacttgcttggcagccaaaaagtggtaag
tttctggcagttcctgtggaaaaatctgttaagctgtatagaagagaaacttggagtaat
cagtttgatctttcagataattttatttctcaggccctgaatatagttacctggtctcct
tgtgggaaatatttagctgcagggagtattaatggtttaattatagtttggaatgtggaa
accagagattgcttggaaagggtaaaacatgagaaaggttatgcaatttgtggtctggct
tggcatccaacttgtgaccagatagcttatacagatgcagaaggaaatttaggactcttg
gagaatgtttgtgacttcattggaaaaacagcaaacagtgaggtgtctaatagagtagaa
aaggattacaatgacctttttgatggagaagattcaagtaatgctggtgattttcttaat
gacaatacaatgaagaaccccagtttttcaaaagggattataaatgatgaggatgacgat
gacctcatgaagatgtcaggaggtcttagacagcgaagtcacgtattagaagatgatgaa
aactcagtggatcttacaatgctaaaaacaggttcaaaacttctcagaggggaggaagaa
gatgatcaggcagctaccattcgcagtccaccacttgtaatatcccaaaggccatcttat
gatgggcctatcccaactcctcggcaaaaaccatttcagtcaggttctacacccttgcat
ctcactcacaggttcatggtatggaactctattggaataattcgctgctataatgatgaa
caagacaatgcaatagatgtggagttccatgatacttccgtacaccattcaacacactta
tcaaacactatgaattatacagtagcagatctttctcatgaagctattttgtttgcctgt
gaaagtactgatgaacaagcaagcaagcttcactgcctacactttagttcttgggattca
agcaaggagtggatagtagatatgcctcagaatgaagatatagaagccatatgccttggc
cagggttgggctgctgctgcaacgaatgccttgctccttcggttgtttactattggaggt
gttcagaaagagatcttcagtcttcccgggtctgtggtgtcaatggcagggcatggagaa
cagcttctcattgtttatcacagaggtacaggatttgatggagatcagtgccttggagtt
caactgctagagctggggaaaaagaaaaagcaaattttgcatggtgagcctctccctctt
acaagaaaatcctaccttgtttggcttggattttcagctgaaggtaccccctgctatgtg
gattcagaaggcattgttcgaatgcttaacagagggcttggtaacacatggacacctgta
tgtaacacaagagagcactgcaaaggaaaatctgatcactattgggtggttggcattcat
gaaaatccccagcagttaaggtgcattccctgtaaaggctctcgttttcctccaaccctt
ccacgccctgctgtagccatattatcttttcagcttccttactgtcagatctccacagag
aaaggacaaatggaggaacagttttggcattcagttatgtttcacaactaccttgattat
ttagctaagaatggttatgaatatgatgaaagcagtaaaaataaagcagtaagagaacag
caggaactcttaatgaaaatgctcgcgctttcttgcaaactggaacgggaatttcgttgt
gtggaacttgctgatctaatgactcaaaatgctgtgcatttggcaattaaatatgcttcc
cgttctcgaaaattaatattggcccaaagacttagtgaactagctgtagaaaaagctgca
gagttggcagcaactcaggtggaagaggaagaggaagaagaggatttcagaaaaaaacta
aatgctggctacagtaatactaacacagagtggagtcagccacgtgtcagaaaccgagag
gaagatgatgctgctgaagaagtcagagaacctgatgatacagaagaaaaacctgaacca
cataggcatggacagaacccattttccaaaagtaaaagttcctcagaattgcaagctgtt
aagtcaggtgcagttacctgtagcagtcaaggacgagtgaatcctttcaaggtatcagtt
agtcccaaagagccagccattccagcaaattcagtacgatcaactaatattttagacaat
ataaacaaatcatccaagaaatccagcacacttaatcgagccacaagtactgaaaagtct
ccagttatcaagcctttaattccaaaaccaaagtctaaacaggtatctgcaacatcattc
ttccaaaaaaagacttcccaagttgaaaagactgaggagctgagggaagaaattcctaaa
aattcatcacctgaaatctcagttatgtgttcacaaaacactgaaaaccagaggccaaaa
acagggttccagatgtggctggaagaaaacagaagtagtattttgtctgacaatccggac
ttttcagatgaagcagacataattaaggaaggaatgactagatttagaatattaacagca
ggagaaagaaaggcatgggccgcgaaggccaaaggagaaactgcagatgatggaactgaa
gcgaagaagaggaaatggctagttgatgaaagtcatgaaactgaaaaccagaaagaaaag
gaaaaggagaatctgaatttgcctaaaaagcataaaccattagatcttactgtgaatcag
aaactgtcagcttttgcctttaaacaggaataa
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