Sorex fumeus (smoky shrew): 130042078
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Entry
130042078 CDS
T10594
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130042078 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130042078 (CPSF2)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130042078 (CPSF2)
U7-dependent histone pre-mRNA processing factors
130042078 (CPSF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
130042078
NCBI-ProteinID:
XP_055990422
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGLQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPTEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEVDIDSS
DESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKNKLESGMTNGDEPTDQDLSDVPTKCVSATESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDT
DMQVDLPSDPSVLAQQKAMKSLFGDDEKEAGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctattatcaagttaactaccctttctgggctccaggaagagtctgccctttgc
tatctgctccaagtggatgagtttagatttttactggactgtggctgggatgagcacttt
tcgatggatattatagattccctgaggaagcatgtgcaccagatcgacgcagtgctgctg
tcgcacccggaccctctgcacctcggagccctcccatacgccgtgggcaagctggggctg
aactgtgcaatctacgccaccatccctgtgtacaaaatgggacagatgttcatgtatgat
ctctaccagtctcgacacaacacggaagatttcacactctttacactggatgacgtggac
gctgccttcgacaaaatccagcagttaaagttttctcagattgtgaatttgaaaggtaaa
ggacatggcttgtccatcacccctctaccagctggtcacatgataggtggaaccatatgg
aaaatcgtcaaggatggagaagaagaaattgtgtatgccgttgacttcaaccacaagagg
gagatccacttaaatggatgttccttggaaatgctgagcagaccctccctactgatcaca
gactcatttaacgccacgtacgtgcagcccaggaggaagcagagagacgaacaacttctg
acaaacgtcctggaaacgctgcgtggcgacgggaatgtgctcatagcagtggacactgca
ggcagagttttggagctcgcccagctgctcgatcagatttggagaactaaagatgctggc
ctgggcgtctactccctggccctgctgaacaacgtcagctacaacgtggtggagttctcc
aagtcccaggtagaatggatgagtgacaaattgatgcgatgcttcgaagacaaaagaaac
aacccgtttcagttccgccatctctccctctgtcacggtctgtcggacttggctcgcgtc
ccgagccccaaagtggtgctggccagtcagcccgacctagagtgcggattctccagggac
ctcttcatccagtggtgccaggacccgaagaactccatcattctcacttacagaaccacc
cctgggaccctggcgcgtttcctcattgacaaccccaccgagaaaatcacagaaatagag
ctgaggaaacgtgtgaagctcgaagggaaagaactggaagaatacttagaaaaagagaaa
ctaaagaaagaagctgctaaaaaactcgagcagtccaaagaggtagatatagattccagt
gatgagagtgacgtcgaggaagatattgaccagccgtcggctcataaaaccaagcatgac
ctgatgatgaaaggggaagggagccggaaggggagtttcttcaagcaggccaagaagtcc
tacccgatgtttcctgcccccgaagaaaggattaaatgggacgaatacggagaaattatc
aaaccagaggatttcttagtgccagaacttcaagccactgaagaggaaaagaacaagttg
gaatctggcatgaccaacggcgatgaacccacggaccaggatctgtcggatgtccccacc
aagtgtgtgtctgccaccgagtcgattgaaatcaaagccagggttacttacatcgactac
gagggacgctctgacggcgactccatcaaaaaaatcatcaatcagatgaaaccacgacag
ctcatcatcgtgcacggcccgccggaggccagccaagacctcgccgagtgctgccgcgcg
ttcggggggaaggacatcaaggtgtacatgcccaagctgcacgagacggtcgacgccacc
agcgagacccacatctaccaggtgaggctgaaggactcgctcgtcagctcccttcagttc
tgcaaggccaaggacgccgagctggcttggatcgacggcgtcctggacatgagggtctcc
aaagtggacacgggcgtcatcctggaagagggggagctgaaggacgacggggaggacacc
gacatgcaggtggacctgccctcggaccctagcgtcctcgcccagcagaaagccatgaag
agcctgtttggggacgacgagaaggaggcgggcgaggagagtgagatcatcccgacactg
gagcctctgccgccgcacgaggttcccggacaccagtctgttttcatgaacgagccgaga
ctgtcggacttcaaacaggttctcttgcgggaggggatccaggccgagttcgtcggaggg
gtgcttgtttgcaataaccaggtcgcagtccgcagaactgagactggacgcattggatta
gaaggttgcctctgtcaagacttttataggatcagagaccttttgtatgaacagtatgcc
attgtgtaa
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