Sorex fumeus (smoky shrew): 130042880
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Entry
130042880 CDS
T10594
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
130042880 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfum04121
]
130042880 (SLX4)
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130042880 (SLX4)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
130042880 (SLX4)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130042880 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
YlbE
Motif
Other DBs
NCBI-GeneID:
130042880
NCBI-ProteinID:
XP_055991100
LinkDB
All DBs
Position
Unknown
AA seq
1336 aa
AA seq
DB search
MHVLLLHLRNAETHQQVMGPHHDGVPSCDAQHPPCPRELLPSSPKPRAAELVVRRMQQFK
RAHPKRLRHASNRGSQEATPEEDIPEQPGEEPTAVPDSRLPAADSNSAVACAPQQELGQE
QTAHHSGSQENRELFCCQICQKNLSTMSVVHREQHVNRCLDEAEKVVIPSAPPVPECPIC
GKPCFTPKSRLSHLKQCAVKMEVGPQLLLQAVRRQAAQPEGTHVPETLACSSHEEGLKRK
GAPSKEPRKRRKVGHEPPSEDLLVAMALSRSEMEQETVPASWASSASPELWLLSTLEKRG
RKKKGPVSPPRLLVQDPETTGRQLEDRVGQLLAEEAEVASTPPLPTSRILGERGTASWCL
QPPAGKTNFLWEGSALAQGWPPDDYYSARLYPYLRPQRPAQASTPPWPSSSHPAETPSPS
ASQREQQALQDLVELAREGLGSSQGPCSGRPASSGGATGEHWASGRLPLTGFVLPSAEPL
DQDGRAVDTLGRLLADFRAMVNNPHLSDVQFQMDNGDVLYAHQFVLYARCPVLMQYVNRE
GFLAMEDGDLRVQRVLLSDVSTEATLTFLHYLYAADAGPVPEVAADLSSLAHRFGVRELL
PLCPGVPAVADAEGEQQEEQEGRARRAENFQELLRSMWAGEEEDTEDVAEPEAREEDREN
VDDADMDEIYEFAATQRKLLREGAAMEAKDGAPAREHSRDRVLLPEPAESPERARGKSPS
IDLTQSKASPGPQGSPSPASRDAEVILLLDSDEELELEQTKLKSEGRRLLESSPKSCELF
SIIDVDADPEGAQTSPARETEPPQEDPWRDRGTPPLFHDPPESSPETDRESSWLVPATPL
ASASRDHSSQTQISGHGSRTLTEPVAQPRAPVQERVRPKAMKKSPEMVHQARSPAHHCPV
TPGSPESQRQVPRSTGRPLPRCSPASPHPDSWHRPDLPPHFQSPKCSPTGMASEVVEVED
SEEEEAGAAHQARSSPLLDGDPPLPPDCCWNTEPLSPIPIDDLNLERTGPLSASSPDGRA
RAAPDSVAGCSPAQLSTTPIRGSCSGPRGSPGSSRLSFLNSSLWDDWDGEEQKSAELPVL
AGTPTRNPSANRAQRSRGFQTPKGANQKNLPPKVPITPMPRYSIMETPVLKKELDRFGVR
PLPKRQMVLKLKEIFQYTHQTLESDSDSSGQLPQSPLEAPSSRACATESAATSVGSSDTS
FSSHSSSWEFGTTFESAGEEEEGEDEVSASQVAVQTAAMETAVSHFIRSRPALYRKVLQY
QPLELAELQAQLKEHGVRVAAGKLLDFLDAHCITFTTAAARKEKIRRKGQRPGSKSKGRR
GKRPPAPSAPLASGSP
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgcttctgctgcacctccgaaatgcagaaacacaccagcaggtaatggggccg
caccacgatggcgttcccagctgtgacgcccagcaccctccttgtccaagggagctgttg
ccaagttcccccaagccccgcgcagccgagctggttgtacggcgcatgcaacagttcaag
agagcgcacccaaagcgcctgagacatgcctccaacaggggctctcaggaggccacccct
gaagaggacatcccggagcagcctggcgaggagcccacagcagtgcctgactccaggctt
cctgccgcggacagcaatagtgcggtggcctgcgccccgcagcaggagctggggcaggag
cagacagcccaccacagcggcagccaggagaacagggagctattctgctgccagatctgc
cagaagaacctgtccaccatgagcgtggtgcacagggagcagcacgtgaacaggtgcctg
gacgaggctgagaaggttgtgataccttcggcgcctcccgtccccgaatgtcccatctgt
ggcaaaccctgcttcactcccaagagccgactcagccacctgaagcagtgcgcagtgaag
atggaggtgggcccgcagctgctgctccaggccgtgcggaggcaggcagcacagcctgag
ggcacccatgtcccggagaccctggcctgcagcagtcacgaggaaggtctgaagcggaag
ggagctcccagcaaggagccacgcaagagacggaaggtcggacacgaacccccatccgag
gacctgctggtggctatggcgctgtcgcgctccgagatggagcaggaaaccgtgcctgct
tcctgggccagcagtgccagccctgagctctggcttctgtccaccctagagaagaggggt
cgcaagaagaaaggccctgtgtccccgccccggctgctggtgcaggacccggagaccaca
ggccggcagctcgaggaccgcgtgggccagctcctggcggaggaggcggaggtggccagc
acgcctccgctgcctaccagcaggattctgggggagcggggcactgccagctggtgtctg
cagccgcccgcagggaagaccaacttcctgtgggagggcagcgcgctggcccagggctgg
ccccccgatgactactactcggcccgcctctacccgtacctgaggccccagcggcctgcc
caggcttccacgcctccgtggccctcgagctcccaccctgcagagactccgtccccatct
gccagccagagggaacaacaggccctgcaggacctcgtggagctggcgagagaggggctg
ggcagcagccaggggccctgcagcgggcgccctgccagctccggaggggccacaggggag
cactgggcttcaggccgccttccgctcactgggtttgtcctgccgtctgcagagcccctg
gaccaggatggccgagctgtggacaccctgggccggctgctggctgacttcagagccatg
gtcaacaacccccacctgagtgatgtgcagttccagatggacaacggggatgtgctctac
gcccaccagtttgtgctctatgctcgctgcccagttctcatgcaatacgtaaacagagaa
ggcttcctggccatggaggatggtgatctgagagtccagcgtgtgctgctgagtgacgtc
agcacagaggccaccctgacattcctgcactacctctatgctgctgatgctggcccggtc
cccgaggtggctgctgacctgagctccctggcgcacaggttcggcgtgcgtgagctgcta
cccctgtgcccaggagtccccgctgtggccgacgccgagggcgagcagcaggaggagcag
gagggccgcgccaggcgggccgagaacttccaggagctgctgaggtccatgtgggccggg
gaggaggaagacaccgaggacgtggcagaacctgaggcccgagaggaggacagagaaaac
gtggatgatgccgacatggacgagatttatgaatttgcagctactcagcggaagctgctc
cgggagggagctgccatggaagccaaggatggggcgccagcgagggagcacagtcgggac
cgggtcttgcttccagagcccgcggagtcccccgagagagcaaggggcaagtctccctcc
attgacctgacccagtcgaaggccagccccgggccacagggttctccgtcccctgcgagc
agagacgctgaagtgatcctcctgctggactccgacgaagagctggagctagagcaaacc
aaactcaagtcagaaggaaggagacttctagaatccagccccaagtcctgcgagctgttc
tccatcattgacgtggacgctgacccggaaggcgcccagacctcacctgccagagagacg
gagcccccacaggaggacccgtggagggacagaggcacgccgccgctcttccacgacccc
cctgagagcagccctgagactgacagggagtcctcgtggctggtgcccgccaccccgctg
gccagcgccagccgtgaccactcctcccagacccagatctcgggccatgggtccaggacg
ttgacggagccagtggcccagcccagggctccggtacaagagagggtcaggcccaaggcc
atgaagaaatcgccggagatggtgcaccaggcacggtcgccagcacatcactgcccagtc
accccaggaagccctgagagccaacggcaggtccccagaagtacaggccgccccctcccc
cgctgctcccccgcatcaccccacccagactcctggcaccgccctgacctgcccccacac
ttccaatcccccaaatgcagccccacagggatggccagtgaagtggtggaagttgaggac
agtgaggaggaggaggcgggggctgcccaccaggcccgcagcagccccctgctggacggg
gatcctcccctgccccctgactgctgctggaacacggagcccctctcgcccatccccatc
gacgatctgaacctggagcgcacgggacccctgagtgccagcagtcccgatggcagggcc
agggcagccccggacagcgtggcaggctgctctccggctcagctcagcaccacccccatc
cggggcagctgctccggcccgaggggctccccggggagcagcaggctgagcttcctgaac
tcctctctctgggatgactgggatggcgaagagcagaaatctgcggagcttccagttctg
gctgggaccccgactcggaaccccagcgccaacagggcccagagatccagaggattccag
acgccaaaaggtgctaatcagaagaacttgcccccgaaagtccccataacccccatgcca
agatattccatcatggagaccccagtgctgaagaaggagctggacaggtttggggtccgc
cctctgcccaagcgccagatggttctgaagctgaaggagatcttccagtacacccaccag
acgctggagtcggactcggacagcagcggccagctgccacagtcacccctggaggcaccg
agcagccgggcctgcgccactgagtccgcagccacctctgtgggcagcagtgacacctcc
tttagctcacacagttcctcctgggagtttggcaccaccttcgagtctgcaggagaagag
gaggaaggcgaggacgaagtcagcgcgtcgcaggtggctgtgcagacggcggccatggag
acggccgtgagccacttcatccgctcccggccagccctctaccgcaaggtgctgcagtac
cagcccctggagttggcagagctgcaggcccagctcaaggagcacggtgtccgggtggcc
gcaggaaagctgctggactttctggacgcccactgcatcaccttcaccacggctgcggcc
cgcaaggagaagatcaggcggaaggggcagcggcctgggagcaagagcaaggggcgcaga
ggcaagaggccccctgccccatccgcacccctggcctccggcagcccctga
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integrated database retrieval system
