Sorex fumeus (smoky shrew): 130043378
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Entry
130043378 CDS
T10594
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130043378 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130043378 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130043378 (SUPT5H)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130043378 (SUPT5H)
RNA polymerase I system
130043378 (SUPT5H)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
130043378 (SUPT5H)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
Arabino_trans_N
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
130043378
NCBI-ProteinID:
XP_055991606
LinkDB
All DBs
Position
Unknown
AA seq
1080 aa
AA seq
DB search
MSDSEDSNFSEEEESERSSDAEEAEVEEEQRSAAGSEKEEEPEEEEEEEEEEEYDEEEEE
EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
KIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
LKMIPRIDYDRIKARMSLKDWFAKKKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVLLDP
QTVGVIVRLERETFQVLNMNGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
GPHSDREGEIRHLYRNIAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
MSPRISSPMHPSAGGQHGGFGSPGGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDA
TESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMY
GSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEDEYEYAFDDEPTPS
PQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPS
PQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHT
PGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQAGVIRSVTGGMCSVYLKDSEKVVSISS
EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagcaatttctccgaggaggaggagagcgagcgcagcagcgac
gccgaggaggccgaggtagaagaggagcagcggagcgcagcaggcagtgagaaggaggaa
gagccagaggaggaagaggaggaggaagaagaggaggaatatgatgaggaagaagaggag
gaagatgatgaccggccccccaagaaaccccgccacggcggcttcattctggatgaagct
gacgtggatgatgagtacgaggatgaagaccagtgggaagatggagccgaagacatcctg
gagaaagcatccaacatcgacaatgttgtcttggatgaagaccgttctggggcgcgccgc
ctgcaaaacctctggagggaccagcgagaggaagaactgggcgagtattacatgaagaaa
tacgccaagtcatctgtgggagagacggtgtatggagggtccgacgagctctcagatgac
atcactcagcagcagctgttgccaggagtcaaggaccccaatctgtggactgtcaagtgt
aagatcggggaggagcgggccacggccatctccttgatgcgcaagttcatcgcctatcag
ttcacagacacgcccctgcagatcaagtcagtggtggccccggagcacgtgaaaggctac
atctacgtggaggcctacaagcagacccatgtgaagcaggccattgagggcgtgggcaac
ctgcggctgggctactggaaccagcagatggtgcccatcaaggagatgacagacgtgctc
aaggtggtgaaggaggtggccaacctgaagcccaagtcctgggtccgcctcaagcggggc
atctacaaggatgacattgctcaggtggattacgtggagccgagtcagaacaccatctct
ctgaagatgatcccgcgcattgactatgaccgcatcaaggcccgcatgagcctgaaagac
tggtttgccaaaaagaagaagtttaagcggcctccacagaggctgttcgatgccgagaag
atcaggtccttgggcggcgacgtggcctccgatggtgacttccttatctttgagggcaac
cgctacagccgcaagggctttctgttcaagagctttgccatgtctgctgtgatcacagaa
ggcgtgaagcccaccctctctgagctggagaagtttgaggaccagcctgagggcatcgac
ctggaggtggtgaccgagagcacagggaaggagcgcgagcacaacttccagcccggggac
aacgtggaggtgtgtgagggggagctcatcaaccttcagggcaagatcctcagcgtggac
ggcaacaagatcaccatcatgcccaagcacgaggacctcaaggacatgctggagttccca
gcccaggagctgcggaagtacttcaagatgggggaccacgtgaaggtgattgctggccgg
ttcgagggggacacaggcctcattgtgcgggtggaggagaacttcgtcatcctcttctcc
gatctcaccatgcacgagctgaaggtgctgccccgggatctgcagctctgctccgaaaca
gcctctggggtggatgttggcggccagcatgaatggggcgagctggtgctgcttgacccc
cagactgtgggcgtcattgtgcggctggagcgggagaccttccaggtgctgaacatgaat
gggaaggtggtgactgtcaggcaccaggctgtcacccggaagaaggacaaccgtttcgcg
gtggccctggactcagagcagaacaacatccatgtgaaagacatcgtcaaggtcatcgac
ggcccccactcggaccgggagggtgaaatccgccatctctaccgcaacattgccttcctg
cactgcaagaagctggtggagaacgggggcatgtttgtctgcaagacgcgccacctggtg
ctggccggaggctcgaagccgcgagacgtgaccaacttcaccgtgggtggctttgctcca
atgagcccccggatcagcagccctatgcaccccagtgctggaggtcagcatggcggcttt
ggcagccctggcggcggcatgagcaggggtcgggggcggagagacaatgaactcatcggt
cagactgtgcggatttcccagggcccctacaaaggctatattggcgtggtgaaggatgcc
accgaatcgacagcccgcgtggagctgcactccacctgccagaccatctctgtggaccgc
cagcgactcaccaccgtgggctcccggcgtccaggcggcatgacctccacctacgggcgg
acccccatgtacggttcccagacgcccatgtacggctccggctcccgcacgcctatgtac
ggctctcagacgcctctccaggacggaagccgcactccgcattatggctcacagacaccc
ctgcatgatggcagccgcactcctgcccagagtggggcttgggaccccaacaacccgaac
acgccatccagggctgaggacgaatatgagtatgccttcgacgatgagcccaccccatcc
ccacaagcctacgggggcacccccaatccccagacacccggctatccagacccctcttcc
ccccaggtcaacccacagtacaacccacagacaccaggaacaccggccatgtacaacaca
gaccagttctccccctacgccgccccctccccacaaggctcctaccagcccagccccagc
cctcagagctaccaccaggtggcccccagcccagcaggctaccagaacacccattctccg
gccagctaccaccccacgccctcgcccatggcctaccaggccagccccagtcccagccct
gtgggctacagtccgatgacacccggagccccctcccctggaggctacaacccccacacc
ccaggctcagggattgagcagaactccagcgactgggtgaccactgacatccaggtgaag
gtgcgggacacctacctggacacgcaagtggtgggacaggcaggcgtcatccgcagcgtc
acgggcggcatgtgctccgtgtatttgaaggacagtgagaaggtggtcagcatctccagc
gagcatctggagcccatcacccccaccaagaacaacaaggtgaaggtgatcctgggtgag
gaccgggaggccaccggcgtcctcctcagcattgacggtgaggatggcattgtccgcatg
gacctggatgagcagctcaagatcctcaacctccgcttcctggggaagctgctggaggcc
tga
DBGET
integrated database retrieval system
