Sorex fumeus (smoky shrew): 130043531
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Entry
130043531 CDS
T10594
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130043531 (CTCF)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130043531 (CTCF)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130043531 (CTCF)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130043531 (CTCF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_6
zf-C2H2_15
zf-C2H2_CASZ1
zf-WIZ
DUF8106
HMBD
Zn_ribbon_DUF2089
DUF7410
Motif
Other DBs
NCBI-GeneID:
130043531
NCBI-ProteinID:
XP_055991857
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MEGEAVEAVAEESETFIKGKERKTYQRRREGGQEEDACHVPQNQTDGGEGVQDVNNSVQM
VMMEQLDPTLLQMKTEVMEGAVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDPSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPVTPAPPPAKKRRGRPPGRTN
QPKQTQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGDDEAQPAATDAPNGDLTPEMI
LSMMDR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaggcggttgaagctgttgcggaggagtctgaaactttcattaaaggaaag
gaaagaaagacttaccagagacgccgggaagggggccaggaagaagatgcttgccatgta
ccccagaaccagactgatgggggcgagggggtccaagatgtcaataacagtgtacagatg
gttatgatggaacagctggatccgaccctgcttcagatgaagactgaagtcatggagggt
gcagttgctcccgaagcagaggctgctgtggacgatacgcagatcataactttgcaggtg
gtaaatatggaggaacagcccataaacataggagaactgcagctcgttcaagtacctgtt
cctgtgactgtccccgttgctacgacatcggtagaagaactgcagggggcttatgagaat
gaagtgtcgaaagagggccttgcagaaagcgagcccatgatatgtcacaccttacctttg
cctgaggggtttcaagtggtgaaagtgggggccaatggagaagtggagactctagagcaa
ggggaacttccacctcaggaagatcctagttggcaaaaagatccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaactccgttatacagaggagggcaaagat
gtggatgtgtctgtctacgattttgaggaagagcagcaggagggcctgctgtcagaagtt
aatgcagagaaagtggttggtaatatgaagcctccaaaaccaacaaaaattaaaaagaaa
ggtgtaaagaagacattccagtgtgagctttgcagttacacgtgtccacggcgctcaaat
ttggatcgtcacatgaaaagtcacactgatgagagaccacacaagtgccatctctgtggt
agggcattcagaacagtcacccttctgaggaatcatcttaatacccacacaggtactcgt
cctcacaagtgcccagactgtgacatggcctttgtgactagtggagaattggtgcggcat
cgtcgttataaacatactcacgagaagccatttaagtgttctatgtgtgattatgccagc
gtagaagtcagcaaattaaaacgtcacattcgctctcatactggagagcgtccgttccag
tgcagcttgtgcagttatgctagcagggacacatacaagttgaaaaggcacatgagaacc
cattcaggggaaaaaccttatgaatgttatatttgtcatgctcggtttacccaaagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcactgtccc
cactgtgacactgtcatagcccgcaaaagcgatttgggtgttcacttgcgaaagcagcat
tcctatattgagcaaggcaaaaagtgccgatattgcgatgctgtgtttcatgagcgctat
gccctcatccagcatcagaaatcgcacaagaacgagaagcgctttaagtgtgaccagtgt
gattatgcttgcagacaggagaggcacatgatcatgcacaagagaacccacactggggag
aagccttacgcctgcagccactgcgacaagaccttccggcagaagcagctcctcgacatg
cacttcaaacgctaccatgatcctaactttgttcctgcggcctttgtatgttctaagtgt
gggaagacatttacacgccggaataccatggcaagacatgcagataattgtgctggccca
gatggtgtagaaggggaaaatggaggagaaacaaagaagagtaaacgcgggagaaaacga
aagatgcgttctaaaaaagaagactcctctgacagtgaaaatgctgagccagacttggat
gacaatgaggatgaggaggagcctgctgtggaaattgaacccgagccagagccccagcct
gtgaccccagccccaccacccgccaagaagcggagaggacgcccccccggcagaaccaac
cagcccaaacagacccagccaacagccatcattcaggttgaagatcagaacacaggtgca
attgagaacattatagttgaagtcaaaaaagagccagacgcagagcctgcggagggcgac
gatgaggcccagccagctgcgacagacgcccccaatggagacctcacgcctgagatgatc
ctcagcatgatggaccggtga
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integrated database retrieval system
