Sorex fumeus (smoky shrew): 130043547
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Entry
130043547 CDS
T10594
Symbol
CIC
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
130043547 (CIC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130043547 (CIC)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130043547 (CIC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
130043547
NCBI-ProteinID:
XP_055991887
LinkDB
All DBs
Position
Unknown
AA seq
2511 aa
AA seq
DB search
MKPMKKTCTGLAGPGSGGRSPPATRAKALRRRGAEESDKPEEEEDETQQQPPPPPPPGPE
EAEEGEEEAERGPRAEGLPSELHPDDQTSGPAEDPKVEGETGRWEPSLSRKTATFKSRAP
KKKYVEEHGTGGGTAGGPEEQTRTPEEAGALGVPPRPPTSTRSSSTDTASEHSADLEDEP
AEAGGPGPWPQGGSGGGCDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGDRA
LTFYEGAPRGGGGVDVVLDATPPPGALAVGTAVCTCVEPGVAAYRAGVVVEVATKPAAYK
VRLSPGPSSQAGTPVGPPQVPQPSHREAEETVWVARSSLRLLRPPWEPETLPRKPPTGPE
EEQAEPGAPLPSCPAALDPKQPEDAEVSKISFGGNLGTCEEGEEKHPPALGTPALLPLPP
PQLLSPPPKSPAFAGPGRPGEQPSPCQEGSQGGSRSSSVASLEKGAAPAARARTPLTAAQ
QKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADS
GPGGAGRPAGVAAREGSAEFDWGDETSRDSEASSVATRGDSRPRLVAPADLSRFEFDECE
AAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAV
RSRHLSASTPKAGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTEL
LPHPGALGAPGPGAGGAAPDFPKSDSLDSGAEAVSHTPTPSTPAGFRSVSPAVPFSRSRQ
PSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFPGEVGAASESRAGG
TGRGCRETPAPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTFGLASSPFQPVAF
HPSPAALLPVLVPSSYTSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQP
DPSVQPSEAQQPASHPVASNQSKEPAESAAVAHEQPPGGPGNADPGRPPGATCPESPGPP
HTLGGVDPGKGPPPTTEEETPGPPGESRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRT
QSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVS
KILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPPSLGLAGG
HKEARERSMSETGTAAAPGMSSELLSVAAQTLLSSDTKAPGSGSCGTDRLHTVGGPGSAR
PRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSAQYGASGPFAAPGEGGALA
ASGRPPLLPTRASRSQRVASEDMTSDEERMVICEEEGDDDVIADDGFSATDIDLKCKERV
TDSESGDSSGEDPEGNKGFGRKVFSPVIRSSFTHCRPPMDPEPPGPPDPPAAFGKGYGSA
PSSSSPAAASASAASSFPLGSGSFKTQESGQGSTGGPLRPPPAGPGGPPAPSKATRFLPA
DTAPFRRKRPESVGALEPPGPSVIAAPPGGGGSILQSLVLPPSKEEREGSGARMPSAPAP
SLAYGAPAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPPSGRAEAAPSDSAGARTETSG
SRAPGGSPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPA
PPAVQFIAQGAPGSGASTGSGAVAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQ
QLQVAPTPAPAPGTKAAASGGPVPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPS
APPPKAQSPGGSAQLLPGKVLVPLATPSVSVRGSGAGQPLPLVSPPFSVPVQNGAQPPSK
IIQLTPVPVSTPSGLVPPLSPATLPGPTSQPQKVLLPSSTRITYVQSAGGHTLPLGTSPT
SSQPGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSGQAPLLAPGQVGVSPVPNPQLPPT
CTASGGPVITAFYPGSPAPTSSAPLAQPSQAAPGLVYTVATSTTPPAAAILPKGPPAPAT
ATPAPTSPFPSATAGSMTYSLVAPKAQRPVPKAPQKVKAAIASIPVGSFEAGAPGRPGPA
ARQPLEPGPARDTPVPETELEGQPTTPGPPHPPEAWPPATRSSPPPPPAAEERGGTKGTE
SMASKFPSSSADWRVPGMGLETRGEPPTPPSPAPAPALAAGSSSSGSGNSEGSSGRAAGD
TPERKEPTGPGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQ
SLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKIRRRSSCSSEPNTPKSAKCEGDIF
TFDRTGTEAEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARY
ADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEASLPGPPPAGATAAPGPTPSPAGGP
DPTSPGSDSGTAPAAPPLPPPPEPGPGQPGWEGPSQASPPPPGSSTAATGR
NT seq
7536 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatgaagaagacgtgcacaggacttgcaggtcctggcagcggtggcaggtcc
cccccagccacccgagccaaggccctgaggaggcggggggccgaagagagtgacaagcca
gaggaagaagaggatgagacgcagcagcagccgccgccgccgccgcctccagggccagaa
gaggctgaagaaggtgaggaggaggctgagcggggccccagggcagaggggctgccctcc
gagttgcatcccgatgaccagacctcaggcccagcagaggaccctaaagtagagggagag
accggccgctgggagccgtcactcagccgaaagacggccacgttcaaatcacgcgcgccc
aagaagaagtatgtcgaggagcacgggactggcggcgggacagcggggggccctgaagag
cagacacggactcctgaggaggccggtgccctgggggtgcctccccggccccccacctcc
acccgctcctcgtccaccgacacagccagtgagcactcggcagacctggaggacgagccg
gctgaagctggggggccaggcccctggccccagggtggctctgggggtggctgtgacctg
cggcagctgcggtcccagcgtgtgctggcccgccgtggtgatggcctcttcctgcccgct
gtggtgcgccaggtgcgccgcagccaggacctgggggtacagttccctggcgaccgagcc
ctaactttctacgagggggcgcctagaggtggcggtggcgttgatgtggttttagatgcc
acgccgcccccaggcgccctggcagtgggcacggccgtctgtacctgcgtggagcccggc
gtggcggcctaccgtgccggcgtggtggtagaggtggccaccaagccggctgcctacaag
gtccgcctcagcccggggcccagctcccaagcaggcacccctgttggcccgccccaggtc
ccccagccctctcaccgcgaggccgaggagaccgtgtgggtggcccgctctagcctgcgc
ctgctgcggcccccctgggagccagagaccctgccaagaaagccccccacaggcccagag
gaggagcaagctgagcccggagctcccctgccttcctgccctgcagccctggaccccaag
cagcccgaggatgctgaggtctccaagatcagttttggaggcaacctaggaacctgcgag
gagggcgaggagaagcatccgccagcgctgggcaccccggccctgctgcctctgcccccg
ccccagctcctgtcaccgccccccaagtcgccagccttcgcaggccccgggcgccctggt
gagcagccatcgccctgccaggagggcagccagggtggcagccggagcagcagtgtggcc
tccctggagaagggcgcggcaccggctgcccgggcccgcaccccgctgacagccgcacaa
cagaagtacaagaagggtgatgtcgtctgcacacccaacggcatccgcaagaagttcaac
ggcaaacagtggcgccggctgtgctcccgggatggctgcatgaaggagtcgcagaggcgc
ggctactgctcccggcacctgtccatgcggacgaaggagatggagggcctggcggacagt
ggtcctggaggtgctgggcggcctgctggtgtggcggcccgggaaggcagcgcggagttt
gactggggggacgagacatcgcgggacagcgaggccagcagcgtggccacccggggggat
tcgcgaccgcgcctcgtggcccccgccgacctgtcccgctttgagtttgatgagtgcgag
gcggcagtgatgctcgtgtcgctgggcagctcgcgctcaggcaccccgtccttctccccc
gtgtccacgcagtcccccttctcgccagccccgtccccctcgccctcaccactcttcggc
tttcgccctgccaatttcagccccatcaacgcttcacctgtgatccagcgcacggccgta
cgcagccgccacctgagtgccagcaccccaaaggccggcgtgctgacaccgcctgacctg
ggcccccacccaccaccgcccgccccacgagagcgccattcctccggcatcctgcccacc
ttccagaccaacctgacgttcaccgtgcccatcagccccgggcggcggaagacggagctg
ctgccgcacccaggagctttgggggctccaggccctggagctggaggggctgcccctgac
ttcccgaagagtgacagcctagactcgggcgcggaagctgtgtctcacacgccgacgccc
tccactccggctggcttccggtctgtgtcgcccgcagtgcccttctcccgatcccgacag
ccctcaccgttgctgctgttgccaccccctgccggcctgacctctgacccgggcccctct
gtgcggagggtgcccgctgtgcagcgggactcgcctgtcatcgtccgcaaccccgacgtg
ccactgccctccaagttcccaggagaggtgggagctgccagtgagtcgcgggctggaggc
actggacggggctgccgagagaccccagcgccccccggagtggccagtgggaagcctgga
ctgccccctcctctgccagccccggtgcccatcaccgtgcctcccgccgcgccaaccgct
gtggcccagccgatgcccacctttggcctggcatcctcgccctttcagccggtggccttc
cacccctcccctgctgccctgttgcccgtcttggtgcctagcagctataccagccatcct
gcacccaagaaggaggtgatcatgggccgacctgggacagtgtggacgaacgtggagcct
cgctctgtggccgtgttcccctggcactccctcgtccccttcctggcccccagccagccc
gacccctctgtgcagccaagtgaggcccagcaacctgccagccaccccgtggcctccaac
cagagcaaagaacctgctgagtctgcagccgttgcccatgagcagcctccaggtgggccc
ggcaatgctgatcccgggcggcctcccggagcaacctgccctgagagcccagggcccccg
cacactttgggaggggtggaccctggaaagggccctcctcctaccacagaagaagagacc
cctgggcccccgggagagtcgcggctggacagtgagacagaaagtgaccatgatgatgct
ttcctctccatcatgtctccggagatccagctgcctctgcctccggggaagcggcggacc
cagtccctcagtgccctgcccaaggaaagggactcctcctccgagaaggatggacgcagc
cccaacaagcgcgagaaggatcacatccggaggcccatgaatgccttcatgatcttcagc
aagcggcaccgggccctggtgcaccagcgtcaccccaaccaggacaaccggaccgtcagc
aagatcctgggcgagtggtggtatgccctggggcccaaggagaagcagaagtaccatgac
ctggcctttcaggtcaaggaagcccactttaaggcccacccagactggaagtggtgcaat
aaggaccgcaagaagtccagctccgaggccaagcccccgagcctggggctggcaggaggg
cacaaggaggcacgggagcggagcatgtcggagacgggcactgctgctgcccctggaatg
tcctctgagctcctgtccgtcgccgcccagacgctcttgagctcagacaccaaggccccg
gggagcggctcctgcgggactgaccgtctgcacacagttggggggcctggctcagcccgg
ccacgggccttctcccacagtggggtgcacagcctggacggtggggaagtagacagccaa
gcactccaggagctgactcagatggtgtccggccctgcgtcctactccggcccaaagcct
tctgcccagtatggggcgtcaggccccttcgccgctcctggtgagggaggggccctggca
gccagtgggcgacccccgctgctacccacccgagcttctcgttcgcagcgtgtggccagt
gaagatatgaccagcgatgaggaacggatggtcatctgtgaggaggaaggggatgacgat
gtaattgctgacgatggcttcagtgccaccgacattgacctcaagtgcaaggagcgggtg
actgacagtgagagtggagacagctctggggaggacccagagggcaacaagggctttggc
cggaaggtgttctcacccgtgatccgttcctcctttacccactgccgtcctccgatggac
cccgaacccccaggacccccagatcctcctgcagcctttggcaaaggctacggttccgcc
ccatcttcctcctcacctgccgctgcctccgcctctgctgcctcttccttcccactgggc
tcaggatccttcaagacccaggagtccggacagggcagcactggtggccctctccggccg
ccacccgccgggcctgggggcccacccgccccttccaaggccacccgcttcctcccagct
gataccgcccctttccggcgcaagagacctgagagtgtgggggccttggaaccaccaggt
ccctcagtcattgcggcacctcccggtggaggtggcagcatcctgcagagcctggtcctg
cccccgagcaaggaggagcgggagggcagtggtgcccgcatgccctcagctccagcccca
tcgctggcctatggggctcccgcagcccccctgtcccgcccggctgccaccatggtcacc
aatgtggtgcggcccgtcagcagcactcctgtgcccatcgcctccaagccctttcccccc
tccggccgggcagaggcggctccaagtgactcggcaggtgctaggactgagacctctggg
tcccgggctcccggaggctccccactgggcgtcagcttggtgtactcagacaagaagtca
gcagccgccacctcaccagccccgcatctggttgctggacccctgctgggcactgtgggg
aaggcacctgccactgtcaccaacctactggtgggcaccccaggctatggggccccagcg
ccccctgctgtccagttcattgcccagggagctcctggcagtggggccagtactggttca
ggagcagttgctgggagtggccccaatgggccagtgcctttgggcattctgcagccaggt
gctctgggcaaggctgggggcatcacccaggtgcagtacatcctgcctacactgccccag
cagttgcaggtggctcccacccctgcaccagcccctgggaccaaggcagcagcttctggt
ggccccgtgcccaccaccagcatccgtttcaccctcccaccgggtacctccaccaacggc
aaagtcctggccgccaccgcacctacgcccggcatccccatcctgcagtctgtcccgtct
gctccaccccccaaagcccagtcccccggtggttctgcccagctgctacctgggaaggtc
ttggtgcccctggccactcccagcgtgtcagtgcggggcagcggggccggccagcccctg
cccctggtgagcccacccttctcggttcctgtgcagaacggcgcacagccccccagcaag
atcatccaactgactccagtgcccgtgagcacccccagcggcctggtgccgcccctcagc
ccagccacgctccccggacccacctcgcagccccagaaagtcctgctgccttcctccacc
aggatcacctatgtgcagtcggcgggagggcacacgctgcccctgggcaccagccccaca
tccagccagcctggcaccgtcacctcgtacgggcccacgagctccgttgccctcggtttc
acctctctggggcccagtggccctgccttcgtgcagcccctgctttcaggccaagccccg
ctgctggcacctggccaggtgggcgtgtcacctgtacccaacccccagctgccccccact
tgcacggcctccgggggtcctgtcatcacagcgttttaccctggcagtcctgctcccacc
tcctcagcacccctggcccagccgtcccaggccgcccctggtctagtctacactgtggcc
accagcaccaccccacctgctgccgccatcctgcccaagggcccgccggcccctgccact
gccaccccagctcccaccagccctttcccaagtgccacagcaggctccatgacatacagc
ttagtggcccccaaagcccagcgacctgtgcccaaggccccccagaaagtgaaggcagcc
atcgccagcattcctgtgggctccttcgaggcaggtgcccctgggcggcctggcccagca
gcccggcaacccctggagcccggccctgctcgggacaccccagtccccgaaactgagctg
gagggacagccaacgaccccaggtcccccacaccccccagaggcctggccacctgcgact
cggagcagtcccccacctcccccagctgctgaagagcggggtggcaccaagggcaccgag
agcatggccagcaaattccccagctcatctgccgactggcgcgtccctgggatgggcctc
gagacccgtggggagccccccacccctcccagtcccgccccagctccagccctggccgcg
ggaagcagcagcagtggcagcggcaacagtgagggcagcagcgggagggcagctggggac
acccctgagcgcaaggagcccacgggtcctggcaagaaggtgaaggtgcggcccccgccc
ctgaagaagacctttgactctgtggacaacagggtcttgtccgaggtggactttgaagag
cgcttcgccgagctgcccgagtttcggcctgaggaggtgcttccctcgcccaccctccag
tctctggccacctccccgcgcgccatcctgggctcctaccgcaagaagaggaagaactcc
actgacctggactcagcccccgaggaccccacttcacccaaacgcaagatccggagacgc
tccagctgcagctcggagcccaacacccccaagagcgccaagtgcgaaggggacatcttc
accttcgaccgcacaggaacagaagccgaggatgtcctgggggagctggaatacgagaag
gtgccctactcctccctgcggcgcaccctagaccagcgccgcgccctggtcatgcagctc
ttccaggaccacggcttcttcccctctgcccaggccacggccgccttccaggcccgctac
gcagacatcttcccctccaaggtgtgtctgcagctgaagatccgcgaggtgcgccagaag
atcatgcaggctgccacgcccacggagcagcctcctggcgctgaggcctccctgcctgga
ccaccccccgcgggtgccaccgcagcccctggccccactcccagccccgcaggaggccct
gaccccacctcgcctggctcggactctggcacagccccggccgccccaccgctgcctccc
ccgcctgagccaggacctgggcagcccggctgggagggcccctcccaggcatccccgcca
ccacctggctcctctacagctgccacaggcaggtga
DBGET
integrated database retrieval system
