Sorex fumeus (smoky shrew): 130043568
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Entry
130043568 CDS
T10594
Symbol
DHX34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130043568 (DHX34)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130043568 (DHX34)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130043568 (DHX34)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2_DHX34
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
nSTAND3
AAA_22
AAA_16
TsaE
DUF4611
ResIII
Motif
Other DBs
NCBI-GeneID:
130043568
NCBI-ProteinID:
XP_055991924
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
MPPPRARESGEPRARHHAPREEAACQSWDWTCPETRRLFEEAFFGEGDYIHQGSEECQKF
WTFFEHLQRFHSLRTAHREEKDHGQATSKVPAFADLPRTYDARYRINLSVLGPDTRGSRG
PGSQLPPDRVSEFRRALVHYLDFGQKQAFGRLAKLQRERAALPIAQYGQRLLQMLKEHQV
VVVAGDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGAQVGYQI
RFESTRSAATKIVFLTVGLLLRQIQREPGLPQYQVLIVDEVHERQLHSDFLLGVLRGLLP
RRPDLKVVLMSATINTALFSTYFGGAPVLQVPGRLFPITVIYQPPEKEAAGATSKPEKLD
PRPFLRVLEAIDHKYPAEERGDLLVFLSGMAEISSVLEAAQTYAASTQRWVVLPLHSALS
VADQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDAQAKLQRLQEF
WISQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVG
DPRTFPFIEPPPAASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSL
FSLAEPVLTIAAALSVQSPFPRSAQSNPESSGTRRSLESDQGDPFTLFNVFNAWVQVKSE
RGSNSRKWCRRRGIEEHRLYEMANLRRQFRELLEDHGLLAGARVPEQGDSYSRLQARRER
RALYQLKRQHDAGGGRRRKVLRLDEGLDGGSSDEDPDRRATGGTGDSVDIQDVKFKLRHS
LDQLQAAARSAQDLTRDQLALLKLVLGRGLYPQLALPDPLNSSRKDSDQIFHTRAKQGAV
LHPTCVFTNSPEVLHPQEPEAAAEGSQGDRGRMSSRHQLLAFVSLLETTKPYLVNCVRIP
ALQSLLLFSSSLDTNGDCSRLVADGWLELQLADTDGAVRLLAASLRIRARWERALDRQLS
RQARGRRRHEEEDEEDEEEEEAALENRKEVAALSRELLQFAASKVPYSLRRLTGLETQNL
YVGPQTVTATPSLPGLFGSAPLSPHPTKGGYAVTDFLTYNCLASDRDLYSDCLRTFWTCP
HCALHMPFTPLERMAHENSCPAAPDSTPGAEDVAPEPPPKTSALQRPYHCTECGQHFLFT
PTELLRHRRQHLSQSRGPD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcccagagccagggagagcggggaaccccgagcccggcaccatgccccccgg
gaggaggcagcctgccagagctgggactggacttgcccggagacgcgccggctctttgag
gaggccttctttggtgagggggactatatccaccagggctccgaggagtgccagaagttc
tggaccttctttgagcacctgcagagatttcacagtctccggacagcccaccgggaggag
aaggaccatgggcaggccacatccaaggtcccggcattcgctgacctgccccgcacctat
gacgctcgctaccgcatcaacctctccgtgctggggcccgacacccggggctctcggggt
cccggcagccagctacccccagaccgggtgtctgagttccgccgcgccctagtccactac
ctggactttgggcagaagcaggcgtttgggcggctggccaaactgcagcgggagcgggcg
gccctgcccattgcccagtacgggcagcgcctcctgcagatgctgaaggagcaccaggtg
gtggtggtggcaggtgacacaggctgtggcaagtccacgcaggtgccccagtacctgctg
gctgcgggcttcagccacgtggcctgcacccagccccggcgtatcgcctgcatctcactg
gccaagcgcgttggcttcgagagcctgagtcagtacggcgcccaggttggctaccagatt
cgctttgagagcacgcgctcggccgccaccaagatcgtgttcctgacggtggggctgttg
ctgaggcagatccagcgcgagccgggcctgccccagtaccaggtgctgatcgtggacgag
gtgcacgagcggcagctgcacagcgacttcctgctgggggtgctccggggcctgctgccg
cggcggcccgacctcaaggtggtgctcatgtccgccaccatcaacacggctctcttctcc
acgtacttcggcggggccccggtgctgcaggttcccgggcggctctttcccatcacggtc
atataccagccaccggagaaggaggcagccggggccacgtccaagcctgagaagctggac
ccgcggcctttcctgcgggtgctggaggccatcgaccacaagtacccggccgaggagcgg
ggggacctgctcgtgttcctcagcgggatggccgagatcagctccgtgctagaggccgca
cagacctacgcagccagcacgcagcgctgggtggtgctgcccctgcacagtgccctgtct
gttgctgaccaggacaaggtgtttgatgtggcgccccctggagtccggaagtgcatcttg
tccaccaacattgctgagacctcggtcaccattgatggcatccgctttgtggtggattct
gggaaggtgaaggaaatgagctacgacgcgcaggccaagctgcagcggctgcaggaattc
tggatcagccaggccagtgccgagcagcgcaagggccgtgccggccgtactggacccggc
gtctgcttccggctctatgccgagtctgactacgatgccttcgccccctaccctgtccca
gagattcggagggtcgccctggacgcgttggtgctgcagatgaagagcatgagtgtgggg
gacccccgtaccttccctttcatcgagcccccaccagctgctagcctggaaacggccata
ctctacctccgggaccagggtgccctggacagctcagaagccctcacccccatcgggtcc
ctgctggcccagctgcctgtggatgttgtcattgggaagatgctcatcctgggctcgctg
ttcagcctggcggagccggtgctcaccatcgccgctgccctcagcgtgcagtcgcccttc
ccccgcagcgcccagagcaaccctgagagttcagggacccggcggagcctggagagtgac
cagggagacccattcacgctcttcaatgtcttcaacgcgtgggtgcaggtgaaatcagaa
cggggcagcaactcccgcaagtggtgccgccgccggggcatagaggagcacaggctgtac
gagatggccaaccttcggcgccagttcagggagctattggaggaccacgggctgctggcg
ggggccagggtgccagagcagggggacagctacagccggctgcaggctcgcagggagcgc
cgggccctgtaccagctgaagcggcagcatgacgcgggtgggggacgccggcgcaaggtc
ctgcggctggacgagggtctggacggcggctccagcgatgaggatcctgatcgcagggcc
accgggggtaccggtgacagcgtggacatccaggacgttaagttcaaactccggcacagc
ctggatcagctgcaggcggccgcgcgctcggcacaggacctgacacgggaccagctggcc
ctgctgaagttggtgctgggccgcggcctctacccccagctcgccctccctgaccccctc
aacagcagtcggaaggactcggaccagatcttccacacacgtgccaagcagggcgctgtg
ctacaccccacctgcgtcttcaccaacagccctgaggtgctgcacccccaggagccggag
gctgcagctgaggggagccaaggcgacaggggccggatgagcagccgccaccagctcctc
gccttcgtctccctgctagagaccaccaagccctacctagtcaactgtgtccgcataccc
gcactgcagtccctcctgctgttcagctcctccctggacaccaacggtgactgctcccgc
ctggtggctgacggctggctggagctgcagctcgcagacacagatggcgcagtccggctg
ctggcagcttcgctgcggatccgggcccgctgggaacgggccctggaccggcagctgtcc
cgccaggcccggggacggcggcggcacgaggaggaggacgaggaggacgaggaggaggag
gaggcggccctggagaaccgcaaagaggtggcagctttgagcagggagctgctgcagttc
gcagcctccaaggttccctacagccttcggcggctcacagggctggaaacccagaacctc
tatgtgggacctcagaccgtcacggccaccccgagtctccctggcctctttggcagcgcc
cccttgtctccacaccccaccaaagggggctacgcggtcaccgacttcctcacctacaac
tgccttgcgagcgacagggacctgtacagtgactgtctccgcaccttctggacctgcccg
cactgcgccctgcacatgcccttcacacccctggagcgcatggcccacgagaacagctgc
cctgcagccccggacagcaccccaggggctgaggatgtggcccccgagcccccaccgaag
acgtctgccctgcagaggccttaccactgcacggagtgtgggcagcacttcctgttcacg
cccaccgaactcctgcggcatcgccggcagcatctgagccagagccgggggccggactga
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