Sorex fumeus (smoky shrew): 130043592
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Entry
130043592 CDS
T10594
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03013
Nucleocytoplasmic transport
sfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130043592
03015 mRNA surveillance pathway
130043592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130043592
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130043592
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130043592
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130043592
NCBI-ProteinID:
XP_055991970
LinkDB
All DBs
Position
Unknown
AA seq
517 aa
AA seq
DB search
MTSPSVGREAGSSPPARTCDRAAPASQPAGTSLPPAPGTMATDSWALAVDEQEAAAESLS
NLHLKEEKTKPDANGAVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQR
DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGT
GKTAAFVLAMLSQVEPANRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK
LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSVRIQR
MLPRNCQMLLFSATFEDSVWKFAQKVVPEPNIIKLKREEETLDTIKQYYVLCSNRDEKFQ
ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG
KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM
VDSKHSMDILNRIQEHFNKKIERLDTDDLDEIEKIAN
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgacttctccctccgtggggcgggaggctggctcgtcgccacccgcgaggacctgcgat
cgcgcggcgcccgccagtcagcctgccggcaccagcctccctccggcgcccgggaccatg
gccaccgactcgtgggccctggcggtggacgagcaggaagcggcggccgagtcgttgagc
aacttgcaccttaaggaagagaaaaccaaaccagatgccaatggtgctgttaagaccaat
gcaaacgcagagaagacagatgaagaagagaaagaggacagagctgcgcagtcgttactc
aacaagctgatccgaagcaacctcgtggataacacgaaccaggtggaggtcctgcagcgg
gaccccaactccccgctctactccgtcaagtccttcgaggagctgcgcctgaaaccccaa
cttctccagggagtctatgccatgggtttcaaccgcccctccaagatacaagagaacgcc
ttgcccttgatgcttgctgaacccccacagaacttaatcgcgcagtctcagtctggtact
ggcaaaacagctgcctttgtgttggccatgctcagccaagtagaacctgccaacagatac
cctcagtgtctgtgtctctccccaacgtatgagctcgcccttcaaacaggaaaagtgatt
gaacagatgggcaaattttaccctgagctgaaactggcttatgctgttcgaggcaataaa
ttggagcggggtcagaagatcagcgagcagatcgtcatcggcacccctggcaccgtcctc
gactggtgctccaagctcaagttcatcgaccccaagaagattaaagtgtttgttctggat
gaggccgacgtgatgatcgcgactcagggccaccaggaccagagcgtccgcatccagagg
atgctgcccaggaactgccagatgctgctgttctctgccacgttcgaagactcagtgtgg
aagtttgcccagaaagtggtccccgagcccaacatcatcaagctgaagcgcgaggaggag
acgctggacaccatcaagcagtactacgtgctgtgcagtaaccgtgacgagaagttccag
gccctgtgcaacctctacggggccatcaccatcgcgcaggccatgatcttctgccacact
cgcaaaaccgccagttggctggcagccgagctgtccaaggaaggccaccaggtggcgctg
ctgagcggcgagatgatggtggagcagcgggcagcagtgatcgagcgcttccgcgagggc
aaagagaaggtgctggtcaccaccaacgtgtgcgcccgcggcatcgatgtggagcaggtg
tccgtcgtcatcaactttgacctcccggtggacaaggacgggaaccccgacaatgagacc
tacctgcaccgcatcgggcgcacgggccgcttcggcaagaggggcctggcggtgaacatg
gtggacagcaagcacagcatggacatcctcaacaggatccaggagcacttcaataagaaa
atcgagagattggacacggatgacctggacgagattgagaagatagccaactga
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