Sorex fumeus (smoky shrew): 130044345
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Entry
130044345 CDS
T10594
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130044345 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130044345 (EDC4)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130044345 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
130044345 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EDC4L
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
130044345
NCBI-ProteinID:
XP_055993029
LinkDB
All DBs
Position
Unknown
AA seq
1433 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPNAESQRPPNTYNGDLNGLLVPDPLCSGDAT
SASKSGLRTMPPLSLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALVNCKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCMQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLSADGPHGANPAESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHP
VHEDFAFGESRPELGSEGLNSSAHGSQPDLRRLVELPAPADFLSLSSEAKPKLMTPDAFM
TASTSLQQMAVSPGGSSSSSSSSSSSLTAVSAMSSTSTADPALPRPPEELTLSPKLQLEG
GLSVSSGSLQGSPRGLLPGLLPGPADKLPPKGPGQVPTAASALSLELQEVEPLGLPQASP
SRTRSPDVISSASTALSQDIPEIASEALPRGFGASAPEGLEPDSMASAASALHLLSPRPR
PGSELGPQLGLDGGPGDGDRHSTPSLLEAALTQEATGADSQIWPTAPDITRETCSSLGES
PRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASVSGGFSPKVPAPRL
PAKDWKTKGSPRASPKLKRKGKKEDGDPAVGPRHAEHQVVEPPEDWPALIWQQQRELAGL
RHSQEELLQRLCAQLEGLQSTVTGHVERALESRHEQERILGQRGPRRGRGGGRGVVPGLR
GDTGPVCFLSCGAERRLERALAEGQQRGGQLQEQLTQQLSQALSSAVAGRLERSIRDEIK
KTVPPCVSRSLEPVAGQLSSSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQG
PMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEARE
PVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQHQLHLAVGSLQESILAQVQRIVKGEVS
VALKEQQAAVTSSIMQAMRSAAGTPVPAAHIDCQAQQAHILQLLQQGNLNQAFQQALTAA
DLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSLIQQLASDLGTRTDLKLSYLEEAVMHLD
HSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGKVARRLSLMLHGLVTPSLP
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgctacgcagcacctgcgggacatc
ctcaagctggaccggccggcggggggccccaatgcagagagccagcggccaccaaacacc
tacaatggggacctcaatgggctcctggttccagaccctctctgctcgggtgacgccacc
tcagcaagcaagtctggcctccgcaccatgccacctctcagcctgcaggagaagcaggtc
atctgcctgtcaggagatgacagttctacctgtatcgggattttggcaaaagaggtggag
attgtggccagcagtgactcgagcatctcaagcaaggctcgtgggagcaacaaggtgaaa
atccagcctgtcgccaagtacgactgggaacagaaatactactatggcaacctgattgcc
gtgtccaactccttcttggcttacgccattcgggccgccaacaatggctccgcgatggtg
cgggtgatcagcgtgagcacttcggagcggaccctgctcaagggcttcacgggcagcgtg
gccgacctggccttcgcgcacctcaactcgccacaactggcctgcctggacgaggccggc
aatctcttcgtgtggcgcttggccctggttaattgcaagattcaggaagagatcttggtc
cacatccggcagccggagggcacgccgctgaaccacttccgcaggattatctggtgcccc
ttcatccctgaggagagcgaggactgctgtgaggagagcagccccacggtggccctgctg
catgaagaccgggctgaggtgtgggacctggacatgctccgctccaaccacagcacctgg
ccagtcgacgtcagccagatcaaacagggcttcatcgtggtaaaaggccacagcacatgt
ctgagcgagggggccctctccccagacgggactgtcctggccaccgcgagtcacgatggc
tttgtcaagttctggcagatctacattgagggccaggatgagcccaggtgtctgcatgag
tggaagcctcatgacgggcgccccctctcctgcctcctcttctgtgacaaccacaagaaa
caggaccctgaggtccctttctggcggttcctcatcactggtgctgaccagaaccgggag
cttaagatgtggtgcacggtgtcctggacctgcatgcagaccatccgcttctccccagac
atcttcagctccgtgagcgtgccccccagcctcaaggtttgcctggacctttctgccgag
tacctgattctcagcgatgtgcagcggaaggtcctgtacgtgatggagctgctgcagaat
caggacgagggccgggcctgcttcagctccatctccgagttcctgctcacccaccccgtg
ctcagcttcggcatccaggttgtgagtcgctgccggctgcggcacacggaggtgctgccc
gccgaggaggagaatgacagcctcagcgctgatgggccccatggagctaatcccgcggag
tccgcagccggtgtgctcatcaagctcttctgcgtgcatactaaggcgttgcaagatgtg
cagatccgcttccagccgcagctgaaccctgacgtggtggccccgttgcccacccaccct
gtccacgaggactttgcctttggggagtcccggcccgagctgggctccgagggcctgaac
tccagcgcgcacggctcgcagcctgacctccggcgcctggtggagctgcccgcgcccgcc
gacttcctcagcctgagcagcgaggccaagcccaagctgatgacgcccgacgccttcatg
acggccagcacctccctgcagcagatggcggtgtcgcccggcggcagcagcagctccagc
tccagctccagctcgtctctcacagccgtgtctgccatgagcagcacctccacggcggac
cctgccttgcccaggccccccgaggagctgaccctgagccctaagctgcagcttgaaggt
ggcctgagcgtgagcagcggcagcctgcagggcagcccacgcggcctcctgcccggcctg
ctcccaggcccggccgacaaactccctcccaaggggccgggccaggtacctactgctgcc
tctgcactgtccctggagctacaggaagtggagcccctggggctcccccaggcttctccc
agccgcacccgttcccccgatgttatctcctcagcctccaccgccctgtcccaggacatc
cccgagattgcgtctgaggcccttccccgtggctttggcgcctcggcgcctgagggcctg
gagccagacagtatggcctctgcggcctcggcactccacctcctgtcccctcggccccgc
ccgggttccgagcttggtcctcagcttggcctggatggaggcccgggggacggggatcgg
cacagcactccctccctcctggaagcagccttgacccaggaggccacaggcgctgacagt
cagatctggcccacggcccccgacatcactcgcgagacctgcagcagccttggggaaagc
cccagaaacggcctccaggagaagcacaagagcctggccttccaccggcctccctaccac
ctgctgcagcagcacgacagccaggacgccagtgccgagcagagcgaccatgatgacgag
gtggccagcctcgcctccgtgtcagggggcttcagccccaaggtccccgcaccacggctg
cccgccaaggactggaagaccaagggatcccctcgggcctccccaaagcttaaaaggaag
ggcaagaaggaggacggggatccagcggtggggccacggcacgcagagcaccaggtggtg
gagccccctgaggactggccggcgctgatctggcagcagcagagagagctggcggggctg
cggcacagccaggaggaactgctgcagcgtctgtgcgcccagctggaagggctgcagagc
accgtcacgggccacgtcgagcgagcgctcgagtcccggcacgagcaggagcgtatcctt
gggcagcgagggccgcggcgtggccggggtgggggcagaggcgtcgtccctggcttgcga
ggggacacggggccggtctgcttccttagctgcggtgcagagcggcggctggagcgggcg
ctggccgaggggcagcagcggggcgggcagctgcaggagcagctgacacagcagctgtcc
caggctctgtcttcggctgtggccgggcggctggagcgcagcatccgggacgagatcaag
aagacggtgcctccatgtgtctctcggagcctggagcccgtggcaggccagctgagcagc
tcagtggccaccaagctcacagcagtggagggcagcatgaaagagaatatctccaagctg
ctcaagtccaagaacctgacagacgccatcgcccgagcagctgcagacacgttacagggg
ccgatgcaggctgcctaccgtgaagccttccagagtgtggtgctgcccgccttcgagaag
agctgccaggccatgttccagcagatcaatgacagcttccggctgggcacgcaggagtac
ttgcagcagcttgagagccacatgaagagccggaaggcccgggagcaggaggcgcgcgag
ccagtactggcccagctgcgaggacttgtcagcacactgcagggcgccactgagcagatg
gccgccaccgtgtccagcagcgttcgggctgaggtgcagcaccagctgcacttggctgtg
ggcagcctgcaggagtccattctggcgcaggtgcagcgcatcgttaagggtgaggtgagc
gttgcactcaaggagcagcaggcagcagtcacgtccagcatcatgcaggccatgcgctcg
gccgctggcacaccagttcctgccgcccacattgactgccaggcccagcaagcccacatc
ctgcagctgctgcagcagggcaaccttaaccaggccttccagcaggccctgacagctgcc
gacctgaacctggtgctgtacgtgtgtgaaaccgtggacccaggccaggtctttggacag
ccgccctgtcccctctcccagcccgtcctgctctccctcattcagcagctggcctctgac
ctaggcactagaactgacctcaagctcagctacctggaagaagctgtgatgcacttggac
cacagtgaccccatcactcgggaccacatgggctccgtcatggcccaggtgcgccagaag
cttttccagttcctgcaggctgagccacacaattcccttggaaaagtggcccggcggctc
agcctcatgctgcacggcctcgtgacacccagcctcccttaa
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