Sorex fumeus (smoky shrew): 130044434
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Entry
130044434 CDS
T10594
Symbol
SIX5
Name
(RefSeq) homeobox protein SIX5
KO
K19474
homeobox protein SIX5
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130044434 (SIX5)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
130044434 (SIX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
130044434
NCBI-ProteinID:
XP_055993140
LinkDB
All DBs
Position
Unknown
AA seq
729 aa
AA seq
DB search
MATLPAEPSAGPTAGGEAVAAAATEEEEEEARQLLQTLQAAEGEAAAAAGAGAGEAAARA
EGPGSPGVPGSPPEAAAEPPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLR
GSDPVLRARALVAFQRGEYAELYRLLESRPFPAAHHAFLQDLYLRARYHEAERARGRALG
AVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLS
LTQVSNWFKNRRQRDRTGGGGAPCKSESDGNPATEDESSRSPEELERGLAPATAEVPAQG
SIFLAGTSPPAPCPASSSILVNGSFLAAGSSPAVLLNGSPVIINSLALGEASSLGPLLLA
GAGGTPPAQPSVQATSEAKTSLVLDPQTGEVRLEEAQPEVSLETKGPPGEEVPGPLPQVV
PGPPPAATFPLPPGPVPSVAAPQVVPLSPPPGYPAGLGPTSPLLNLPQVVPTSQVVTLPQ
AVGPLQLLAAGPGSPVKVAAATGPANVHLINSGVGVTALQLPPATAPGNFLLANPVSGSP
IVTGVAVQQGKIILTATFPTSMLVSQVLPPAPSLALPLKPETGLSVPEGALPVAPSPALP
EAQGLGQVTAAPPPQPAAAPAPASLPFPPDSSLLPTFPTAPPEGLLLSPAAVPIWPAGLE
LSAGTEGLLEAEKALGTQAPHPVLRLPDPDPEGLLLGATAGGEVDEGLEAETKVLTQLQS
VPVEEPLEL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggctaccttgcctgccgagccgagcgcggggcccacggctgggggggaggcggtggcc
gcggccgcgaccgaagaggaggaggaggaagcgcgccagctcctgcagactttgcaggca
gccgagggtgaggcggcggcggcagccggggccggggcgggcgaggcggcggcgagagcg
gagggcccggggtccccgggcgtcccggggtcgccccccgaggccgctgccgagccgccc
acgggcctccgcttctcgcccgagcaggtggcgtgcgtgtgcgaggcgctgctccaggct
ggccacgccggccgcttgagccgcttcctgggcgcactgcccccggccgagcgcctacgt
ggcagcgatccggtgctgcgcgctcgggccctggtggccttccagaggggcgagtacgcc
gagctgtaccggctgctcgagagccgccctttccccgccgcccaccacgccttcctgcag
gatctctacctgcgcgcgcgctaccacgaggccgaacgggcccgcggccgcgcgctgggc
gcagtggacaagtatcgtctgcgcaagaagttcccgctgcccaagaccatctgggacggc
gaggagaccgtctactgcttcaaggagcgctcccgcgccgcgctcaaggcctgctatcgc
ggcaaccgctaccccacgccggacgagaagcgccgcctggccacgctcaccggcctctcg
ctcacgcaggtcagcaactggttcaagaaccggcgacagcgcgaccggaccgggggtggc
ggcgcgccctgcaagagcgaatctgatggcaacccggctactgaagacgaatccagccgc
agccccgaggagctggagagggggctggcgccggccactgccgaggtgccagctcaaggt
tccatattcctggcggggaccagccccccggccccgtgcccagcctcctcctccattctg
gtgaacggcagcttcctggcggccggcagctcccccgcagtgctcctcaacggcagccct
gtcatcatcaacagcctggccctgggcgaggcctccagcctgggcccgctgctgcttgcc
ggggctggggggaccccccctgcacagcccagcgtccaggccaccagcgaggccaagacc
tcgctggtcctggatcctcagactggggaggtacggctggaggaggcacagcctgaggta
tccctggagaccaaggggccacctggagaggaggtgcccggccctctgccccaagtggtg
ccgggccccccaccggctgccaccttcccactgcctccaggccccgtgccttccgtggca
gcacctcaggtggtgccgctgtccccaccccccgggtaccctgcaggcctgggccccacc
tctccgctgctaaacctgccccaggtggtgcccacctcccaggtggtgaccctgcctcag
gctgtggggcccctgcagctgttggcagccgggccgggcagccctgtgaaggtggcagca
gcaacgggccctgccaacgtgcacctgatcaactccggggtgggcgtgacagccctgcag
ctgcctccagccaccgcgccaggaaacttcctcctggccaaccctgtgtccggcagcccc
atcgtgacaggcgtggccgtgcagcagggcaagatcatccttacggccaccttccccacc
agcatgctggtctcccaggtgctgccccctgcccccagcctggccctgcccctcaagcca
gagacgggcctctcggtgccagaaggggccctccctgtggcccccagcccagctctcccg
gaggcccaaggcctgggccaggtcacagcagcgccgcccccgcagccagccgcagcccca
gcccctgccagcctgcccttcccgcctgactccagcctcctgcccaccttcccaacggcc
ccacccgaggggctcctgctgtcgccagctgctgtgcccatctggcccgctggcctggaa
ctgagtgcaggcaccgagggactgctagaggctgagaaagcactggggacacaggctccc
caccccgtgctgcggctgccggaccctgaccctgaggggctgttgctgggtgccactgcc
gggggggaggtggatgaggggctggaagccgagaccaaggtcctgacacagctacagtcg
gtgcccgtcgaggagcccttggaactgtga
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