Sorex fumeus (smoky shrew): 130044792
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Entry
130044792 CDS
T10594
Symbol
TNRC6B
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sfum Sorex fumeus (smoky shrew)
Brite
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130044792 (TNRC6B)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130044792 (TNRC6B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
130044792
NCBI-ProteinID:
XP_055993405
LinkDB
All DBs
Position
Unknown
AA seq
1873 aa
AA seq
DB search
MQTNEGEVSEESSSKVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKK
KKEATQKVTEQKTKVPEVTKPSLSQPAAASPIGSSPSPPINGGNNAKRVAVPNGQPPSAA
RYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPLPTAPGANPSTAPGTPGTP
GTGTLLPNEGGAAPESTLGGAAASNYANSTWGPGASNSGASPNPTHIWDKVIVDGSDMEE
WPCIASRDTESSSENTAENNSASTPGSEKSTVPGSTTSNKGKGSQCQSASPGNECNLGVW
KSDPKAKSVQSSSSPTENSGGLGNWRNVSGQDRLGPASGFSNFNPNSNPSAWPALVQEGN
SRKGPLEAENSNSSAQVTAVGQASREQQSKMENAGVNFVVSGREQAQLHNTDGPKNGNTN
SLNLSSPNPLENKGMAFGLGLGNASRGTDTPSQSTGDRKTGSVGSWGAARGPSGTDTTSG
QSNSGNSGNNGKEREDSWKGGSVQKASGSKNDSWDNNNRSTGGSWNFGPQDASDSKWGEG
NKMTSGVSQGEWKQLTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWG
RSSSSTGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPAHPDCQAVLQTLLSRTDLDPRVLS
NTGWGQTQIKQETVWDIEEAPRPEGKSDKGTEGWESAATQTKNSGGWGDAPSQSNQMKSG
WGELSAPTEWKDPKSTGGWTDYKNSNSSGWGGGRADEKAASSWNENPGKEQGWGGGRQPG
QGWASGKNGWGEDVDPAKGSNWDSSAGKPVSGWGEGGQSEIGTWGNGGGAGLTSKGGWED
CKRSPAWTETGRQPSSWNKQHQQPPPPQQPPPQPQPQPEPSSSWGGPPPPPAGNGRPASS
SWGSGPPPGAPKDEEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQG
GPAPREPNLPTPMTSKSASVWSKSTPPAPDNGTSAWGEPNESSPGWGELEEPGASTTGWG
PAPSNAPNAMKPNSKSMQDGWGESDGPVTGTRHPSWEEEDDGGVWNTAGSQGSASSHNSA
SWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVGSLPDKKFD
VDKRAMNLGDFNDIMRKDRSGFRPPNSKDMGTTDSGPYFEKLTLPFSNQDGCLGDEAPCS
SFSPSPSYKLSPSGSTLPNVSLGAIGTGLNPQNFAARQGGNHGLFGNSTAQSRGMHTPVQ
PLNSSPNLRAQVPPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQIP
QFQLACQLLLQQQQQQQQLLQNQRKISQAVRQQQEQQLARMVSALQQQQRQPSMKHSPSH
PVGPKPHLDNMVPSTLNVGLPDLQSKGPIPGYGSGFSSGGIDYGMVGGKEAGTESRFKQW
TSMMEGLPSVATQEANMHKNGAIVAPGKARGGSPYNQFDIIQGDTLGGHTGPAGDSWLPA
KSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTATSPIVDTDH
QLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNPT
HLSNKMWKNHLSSRNTTPLPRPPPGLTTPKPSSPWSSTAPRSVRGWGTQDSRLASASTWS
DGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKA
QTALHMCVLGNTTILAEFATDDEVSRFLAQAQPPTPAATPSAPAAGWQSLETGQTPSDPV
GPALNLFGGSTGLGQWSSGAGGSGADLAGASLWGPPNYSSSLWGVPPVEDPHRMGSPAPL
LPGDLLGGGSDSI
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaatgagggagaagtgtctgaagaaagcagctccaaggtggaacaggaggat
tttgtaatggaagggcatggcaagactccacctcctggtgaagaaagcaaacaagagaag
gagcaagaaagggaagaacagttaatggaagacaagaaaaggaagaaagaggataaaaag
aaaaaagaagccactcagaaggtcacggaacaaaaaaccaaagtgcccgaagtgacgaaa
ccaagtttaagccaaccagcggccgccagccccattggcagctctccatcgccaccaatc
aatggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgcccagcgccgcc
cgctacatgccccgggaggtgccgccgcgattccgttgccagcaggaccacaaagtgtta
ctgaaacgcgggcagccgccgccgccgtcgtgcatgctcctcgggggcggggcggggcct
cctctccccaccgcacccggagcgaaccccagcaccgcgccgggcaccccggggaccccg
ggcaccgggacgttgctgccgaacgagggcggggctgcaccagagtccacccttggaggt
gctgctgcttcaaattatgcaaattccacttggggaccgggagcctccaacagcggcgcc
tcccccaacccgactcacatctgggacaaggtgattgtagacgggtccgacatggaagag
tggccttgcatcgccagcagagacaccgagtcttcttccgaaaacaccgccgagaacaac
agtgcctcaacccctggctccgagaagagcactgtgccagggagcaccactagtaacaaa
ggaaaaggaagccagtgccagtctgcaagtcccgggaacgaatgtaacctcggggtctgg
aagtcggaccccaaggctaagtctgttcaatcttccagctctccgacagagaatagcggt
ggactaggaaattggaggaatgtgagtgggcaggatagactcggacccgcttccggcttc
agcaactttaacccaaatagcaacccatctgcctggccagcactggtccaagaaggaaat
tcccgaaaggggccgctggaggccgagaacagcaattccagtgcccaggtcaccgccgtc
ggtcaggcgtccagggaacagcagtcaaagatggaaaatgcgggtgttaattttgttgtc
tcgggcagagagcaggctcaacttcataacactgatggaccaaaaaatggaaacactaac
tccttgaacttaagttcaccaaaccctctggagaataagggaatggccttcggcctgggc
ttggggaacgcctccaggggcactgataccccttcgcaaagcactggagatcgaaagact
gggagcgttggatcttggggtgcagctagggggccttctggaactgacacaacctctgga
caaagcaattctggaaacagtgggaacaatggaaaggagagagaggactcctggaagggg
ggatctgttcagaaggcgagtgggtcaaaaaacgattcttgggacaacaataacaggtct
acgggtgggtcctggaactttggcccgcaggacgcgagcgacagcaaatggggtgaaggg
aacaaaatgacatctggggtctctcagggagaatggaaacagctgactgggtctgacgag
ttgaaaattggagaatggagtggtccaaaccaaccaaattctagcactggagcatgggac
aatcaaaagggccaccccctccctgaaaaccaaggcaatgcccaggctccctgctgggga
cgatcttccagctccacaggaagtgaggttggaggtcaaagcactggaagcaaccacaaa
gcaggaagtagcgacagccacaattccggccgtcggtcgtaccggcccgcacatcccgat
tgtcaggctgtcttgcagactctcttgagccgaactgatttggaccccagggtgctctcc
aacacgggctggggccagacgcaaatcaagcaggagaccgtgtgggacatcgaagaggcg
ccgcggcccgagggcaagtcggacaaggggactgaggggtgggagagcgctgccacacag
accaagaactcagggggctggggggacgcacctagccaaagcaatcaaatgaagtctgga
tggggagagctctccgccccgacagagtggaaagaccccaagagcacgggcggctggacc
gactacaagaacagcaactcctccggctggggagggggccgggcggacgagaaggccgcc
tcctcgtggaacgagaacccgggcaaggagcagggctgggggggcggacgccagcccggc
caagggtgggcttccgggaagaacggctggggcgaggacgtcgatccggccaagggcagc
aactgggacagctcggccggcaaacccgtgtcggggtggggcgaaggcgggcaaagtgag
atcgggacctggggcaacgggggcggcgccggcctgacctccaaaggcggctgggaagac
tgtaagcgctcgccagcctggaccgagaccggcagacagcccagttcctggaacaaacag
caccaacagccgccaccgccccagcagccgccgccgcagccacagccgcagccggagcct
tcgagttcctggggaggccccccgccgccccctgcgggcaacgggagaccggcgagctcc
agctggggcagtggaccgccgccgggagcccccaaggacgaggagcccagcggctgggaa
gagccgtccccgcagtcaattagccggaaaatggacattgatgacggcacttcggcgtgg
ggcgaccccaacagttacaactacaagaatgtgaatctctgggataagaattcccaaggg
ggcccagcacctcgagaaccaaacctgcctaccccgatgaccagtaaatcagcatcagtc
tggagcaaaagcacaccgcctgctccagataatggcacttcagcctggggagagccaaac
gagagcagtcctgggtggggcgagctggaggagccgggcgcgtcgaccacaggctggggg
cctgcaccctccaacgctccaaatgccatgaaacccaattccaaatctatgcaagacggc
tggggggagagtgacgggccagtgacaggaactcgccatcccagctgggaagaggaggac
gatggaggagtctggaacaccgccggctctcagggaagcgcttcctcccacaactcagca
agctggggacaaggagggaagaaacaaatgaagtgctcactgaagggaggaaacaatgat
tcgtggatgaatcctcttgccaaacagttttcaaatatggggttgctgagtcaaactgaa
gataatccaagcagcaaaatggatttgtctgtagggagccttccagacaaaaaatttgat
gtggacaagcgagcaatgaatctcggggattttaatgatatcatgaggaaggatcgatct
gggttccgtccacctaattccaaagacatgggaaccacagatagtgggccttatttcgag
aagctgactttgcctttctccaatcaagacgggtgccttggggatgaggctccctgctct
tccttctccccttctcccagctacaagctgtctccctctggttccacactacccaacgtc
agccttggagcaatcggcacagggctcaacccccaaaacttcgctgctagacaaggtggc
aatcacggtctgtttggaaatagcacagcacaatcgagaggtatgcacacaccagtgcag
ccgctaaattcttcccctaatctccgggcgcaagtgcctccccagtttatttctccccag
gtttctgcctcaatgctcaaacagtttcccaacagtggcctgaatccaggtcttttcaac
gtggggccccagttatctcctcaacaaattgccatgctgagccagcttccacagatcccc
cagttccagttggcatgccagctcctcttgcagcagcagcagcagcagcagcagctgctc
cagaaccagaggaagatctcccaggccgtgcgccagcagcaggagcagcagctggcccgg
atggtgagcgcgctgcagcagcagcagaggcagccgagcatgaagcactcgccgtcgcat
cccgtggggcccaagccgcacctggacaacatggtccccagcacgctgaacgtggggctc
ccagacctgcagagcaaagggccgatccccggatacggttctgggttcagctccggcggc
atagactacggcatggtcggtgggaaggaggctgggaccgagtctcgctttaaacagtgg
acctctatgatggagggactgccctctgtagccacacaagaagccaatatgcacaaaaat
ggcgctatcgtggcccccggtaaggcccgaggagggtcaccgtacaaccagttcgatatc
atccagggcgacacgctgggtggccacacgggtcctgctggtgatagctggttacctgcc
aaatctccaccaacaaataaaatcggaagtaaatccagcaatgccagttggcctccagaa
tttcaaccaggagtgccatggaaaggtatccaaaatattgaccctgaatctgacccctac
gtcaccccaggaagtgtgctggggggtacagccacatctcccattgtagatactgaccac
caacttctgcgggataacaccacagggtctaactcttccctcaacacctcgctgccttca
cctggtgcctggccctatagtgcctctgacaactcctttaccaacgtccatagcacttca
gcaaagttccctgactataaatcaacatggtccccggatcccatcggacacaaccccact
catctctccaacaagatgtggaaaaaccatctttcctcaaggaacactaccccgctgccc
cgccccccgcccggcctgaccacccccaaaccgtcctctccctggagcagcacagcaccc
cgatcggtcaggggctgggggacacaggactcgcggctcgcctcagcctcgacctggagt
gacggcggctcagttcgtccgagttactggctggtccttcacaatctcactccacagatt
gatgggtcaaccttgagaaccatctgcatgcagcatggccctctgctgacattccacctg
aacctaacccagggcaccgccctgatccgatacagcaccaaacaggaggcggccaaggcc
cagactgcgctgcacatgtgcgtgttgggaaacactaccatcctggccgagttcgccacc
gatgatgaagttagccgctttctggcgcaagcgcagcccccgacgcccgcagccaccccg
agcgcgcctgccgccggctggcagtcgctggagaccggccagaccccgtccgaccccgtg
ggacccgcgctgaatctgtttggtgggtccacgggtctcgggcagtggagcagcggcgct
ggcggcagcggggccgatctcgccggcgcctccttgtggggccccccaaactattcttct
agcttgtggggcgtcccccccgtggaagacccccataggatgggcagtcctgctccttta
ctacctggcgaccttctgggaggagggtccgattcaatctga
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