Sorex fumeus (smoky shrew): 130045673
Help
Entry
130045673 CDS
T10594
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130045673 (RC3H2)
04121 Ubiquitin system [BR:
sfum04121
]
130045673 (RC3H2)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130045673 (RC3H2)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130045673 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf-C3HC4_4
zf_CCCH_4
zf-CCCH_UNK
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
130045673
NCBI-ProteinID:
XP_055994480
LinkDB
All DBs
Position
Unknown
AA seq
1187 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEIAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNSTVTTTAGNVISVI
GSTETTGKMVPSTNGISNAESSVSQLIPRSTDSSLRVLETVKKVGKVGTNGQNAAGPSAE
SVTENKIGSPPKTPVSNVVATSAGPSSVGTELNSVPPKSSPFITRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPLYRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSMACQPPNEPRTTVPLPREPCGHLKTSCEEQIRRKPEQ
WAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRADFSESVSGTKFEEDRLSHYSPWSC
GTIGSCINAIDSEPRDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGPI
ISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATSS
AHYIERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDEG
RHLTLNLLSKEIELRNGESDYAEDTTETKPDRDIELELSALDTDEPDGHGEQIEEILDLQ
LGISSQSDQLMNGTAVENGHTVQQHQKEPLEPKRQSLGEEHVILEEQKTIMPVTSCFSQP
LPVTISNASCLPITAVSVGNLILKTHVMSEEKNDFLKPVANGKMVNS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcataaacccatcagcttaggttgttcacacactgtttgcaagacc
tgcttaaataaacttcaccggaaagcttgccctttcgaccaaactgccatcaacacagac
atcgatgtgcttcctgtgaactttgcacttctccagttagttggagcccaggtaccagat
catcagtcgataaagttaagtaatctaggtgagaacaaacattatgaaattgcaaaaaaa
tgtgttgaggatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgcactgagccgtccaatgcaaaggaaattggtgacacttgtaaactgt
caactggtggaggaagaaggtcgtgtaagagccatgcgagcagctcgttcccttggagaa
agaactgtcacggaactgatattacagcaccagaaccctcagcagttgtctgccaaccta
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaggcc
ttgaagttggtgttgctggcattagaagatgggtctgctctctcaaggaaagttctggta
ctttttgttgtacaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagagatgaagat
tcttccctgatgcagctaaaggaggaatttcgaagttatgaggcattacgcagagaacat
gatgcccagattgttcatattgctatggaggcaggactccgcatttcacccgagcagtgg
tcctcacttctttatggtgacctggcacataaatcacacatgcagtctatcattgataag
ctgcagtctccagaatcatttgcaaagagtgtccaggaattgacaattgttttgcaacgg
acaggtgatccagctaacttaaatagactgaggcctcatttagaacttcttgcaaatata
gaccctaatccagatgctgtttcgccaacttgggagcagctagaaaatgcaatggtagct
gttaaaacagtggttcatggccttgtggatttcatacagaattacagtagaaaaggccat
gaaacacctcagcctcagccaaacagcaaatataaaactagcatgtgccgagatctgcga
cagcaaggagggtgtccacgaggaacaaattgtacttttgcccattctcaggaagaactt
gaaaagtatcgcttaaggaacaaaaagatcaatgcgactgtaagaacatttcctcttcta
aataaagttggtgtaaacagcactgttacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaacggggaaaatggttccaagtacaaacggaatttcaaatgcagaa
agcagtgtttcccagctaatcccacgtagtactgacagttcattaagagttctggagact
gtgaagaaagtggggaaggttggcactaatggtcagaatgctgctgggccttctgcagag
tctgtaactgaaaataaaattggttctccacccaagacacctgtaagtaatgtagtggct
acctcagctgggccctcttctgttggaacagaactaaattctgtgcctccaaaatccagc
ccatttataactagagtaccagtatatcctcagcattctgaaaacattcagtattttcaa
gatccgaggactcagataccctttgaagtcccacagtacccacagacaggctactaccca
cctccgccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagagtcctccctcccacctgcttccatgccgtatgctgatcattacagcaca
ttttccccccgagatcgaatgaattcttctccttaccaacctcctcctcctcagccgtat
ggacccgttcctccagtcccttctggaatgtatgctccagtatatgatagcaggcgcatc
tggcgcccacctttgtaccgagatgacattatcagaagcaattctttacctccaatggat
gtgatgcactcatctgtctaccagacatctttgcgggaaagatacaactcattagatggg
tattattcaatggcttgtcagccacccaatgagccaaggacaactgtgcctttaccaagg
gaaccctgtggtcatttgaagaccagttgcgaggagcagataagaagaaagccagagcag
tgggcacagtaccacactcagaaagcacctcttgtctcttcaactctgcctgttgccact
cagtcaccaacacctccttctcctctgttcagtgtagacttccgcgctgatttctctgag
agtgtgagtggcacaaaatttgaagaagatcgtctttcccactattctccttggtcttgt
ggcaccataggctcctgtataaatgccatcgattcagagcccagagatgtaattgctaat
tcgaatgctgtgttgatggacctggacagtggcgatgttaagagaagagtgcacttattt
gaaactcagagacggacaaaagaagaagacccgataattccttttagtgatggacctatc
atctcaaaatggggtgcaatttcccgatcgtcccgtacagggtatcacactacagatcct
gtccaagccactgcttcccaaggaagtgcaactaagccaatcagtgtatcagattatgtc
ccttatgtcaatgctgttgattcgaggtggagttcttacggtaatgaggccacatcttca
gcacactatatagaacgggacaggttcattgttacggacttatctggtcatagaaagcat
tccagtactggagaccttttgagcattgaacttcagcaggccaagagtaactctctgctt
cttcagagggaggccaatgctctggccatgcagcagaagtggaactccctggatgaaggc
cgccaccttaccttaaatcttctaagcaaggaaattgaactgagaaatggagagagtgat
tatgcagaagatacaactgagacgaagcctgatcgggatattgagctagagctgtcggca
ctcgatactgatgagcctgatggtcacggggaacaaatcgaagagattttagacctgcag
cttggtatcagttctcagagtgatcagctgatgaacggaacagcagtggaaaatgggcac
actgtccagcagcaccagaaggagcccctggagccgaagagacagagcttaggtgaagaa
catgtcattctggaggagcaaaaaacaattatgccggtaacttcttgctttagccagcct
cttccggtgaccattagcaatgcaagttgcctccccatcacagctgtcagtgttggcaac
ctcattctgaaaactcatgttatgtctgaagagaaaaacgactttttaaaacctgttgca
aatgggaagatggtaaacagctga
DBGET
integrated database retrieval system
