Sorex fumeus (smoky shrew): 130046000
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Entry
130046000 CDS
T10594
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03440
Homologous recombination
sfum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130046000 (PALB2)
03460 Fanconi anemia pathway
130046000 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130046000 (PALB2)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
130046000 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
130046000 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR5
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
130046000
NCBI-ProteinID:
XP_055994893
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MEELSGRPLSCAEKEKLKEKLAFLKREYSKTLARLQRAQRAEKLRNSGKKTAGEHDSSFR
QEISSQLNHSESKIKVSPCDPLQISTLLDEETGEKTPVTLDIEPVSFSPDSDPLEEFYLE
KTAVSQEHFSHRDNVPDGEKQVGRLSGRRKQQKRTLTSQEVDSVFGAEFLVLSGRRRKKG
EEIDRDNPRTPTTEIKTYLSTKSDNPDSPAAPTEADGENVLISPIAKPQRDVLLRGNPSP
RVTPLPLHTLLEGSGDRKHLAHKPQKGNCELTAHSVKNICPINSEAQDKNLTIFKDISEE
NKGGSSRDQPPRGLNVEPDNFPSVNEHPDGNLLAHRNQSLNEHHHTETLVDSPDNVRKGG
NESLQKQVIGSQSKSVIPEGTAPVSSENQAHSCTMIEGLLFPAEYYVRTTRHMSDSQRKV
ALESVIQNHLGIRKKILRNKKETTKTVSHSNEETGQSETRTSNLGTGQPASRGPQKLSWT
EVRSPPESAKDDFLRKLVSQPFGGRQSGKRKSSISSVLDHHELLLPTSGTSAAARSKGQV
VHEEKTQNTIVHGKEVCGQKEDCISFSSAHLALDNDTFSAPFLKDEKRILKHLSSFLNVT
DFQLPDEDFGLLKLEKLKSCSEKPVEPFESKYQEEQLELKEENWVVLEEQTPKQVDKEME
DLEEVLSPPRNAHLKTSSLRKQPLKDLSSSILLFTPVNTVVPDDDRPTSLCSPTFPILGT
TPALLSQAHSEKMPAETIPQMSCTPCLSHTKATSSPCGKHNRLTSSPKCDGILDGSGRKG
QPACGPGSQATPLPTMLAACEENPLKDLCLEHATEQTDPADLPPCDNLNPGSLQLVSKLK
NPSGSCSVDVSALWWEIAGLKEPCIITACEYVVSLWRPLDTMQWEKVYSWHFTEVPVLQI
VPVPGLCSLVCVALGNLEIREIRALLYSSDGHSERQALLSSGNIKAVLGLTKRRLVSSHG
THCDQQVEILTFSEDGGSKEKQFLMPPEETILTFAEVQGMQEALLGSTIMNNIVIWNLKT
GQLLKKMNIGDSYQASVCHRAYSEMGLLFIVLSHPCAKESEPTGSPVFQLIVINPKTTLS
MGVMLYCLPQGQAGRFLEGDVKDSLAAAVLTSGRIAVWDLLLGHCTVLLPPVSDQNWSFV
KWSGTDSHLLAGQKDGNIFVYRY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctttccgggaggcccctcagctgtgcggagaaggaaaagttgaaggaaaaa
ttagcattcttgaagagagaatacagcaagacattggcccgcttgcagcgtgcccaaaga
gctgagaaacttaggaattctggtaagaagacagcgggagaacatgatagctcattccgg
caggaaatttcttcacagttaaaccactcagaatctaaaattaaagtgtctccttgtgat
ccattacaaatcagtacccttctcgatgaagaaactggagaaaagacacctgtcactctt
gacattgagcctgtgtcctttagccctgacagtgaccctttggaagaattttatctagaa
aaaacagctgtgagccaagaacatttttcccacagggacaatgtccctgatggtgagaaa
caggtgggtaggctgtcagggagaagaaagcagcagaagagaactttgacttcacaggag
gtagactctgtctttggtgctgagttccttgttctctctggaagaagacgaaagaaagga
gaagaaattgatagagacaatcctaggacccccacaactgaaataaaaacgtacctttca
actaagtctgacaacccggattctccagcagcacccacagaagccgatggagagaatgta
ttaatttcaccaattgccaaaccacaaagagatgtgctcttaagaggaaatccttccccc
agggtgactccgcttcctttgcatactctcttagaaggtagtggtgatcgcaagcacctt
gcacataagccacaaaaaggaaactgtgaactcactgctcacagtgtaaaaaacatttgc
cctataaactcagaggcacaagacaaaaacctgactatcttcaaagatatctcagaggaa
aataaaggtggaagttcaagggaccagccgcccagaggtcttaacgtagagccagacaac
tttccttctgtaaatgagcacccagatggtaacttactggcacacagaaaccaaagccta
aatgaacatcatcacacagaaacacttgtagattctcccgataatgttcgaaagggtgga
aatgagagtcttcagaaacaggtgattggaagtcagtctaaaagtgtcatccctgaagga
actgctcctgtttcttcagaaaatcaagcacattcttgcacaatgatcgaaggacttcta
tttcctgctgaatattatgttagaacaacacggcacatgtcagattcccagaggaaagta
gccctcgagtctgtaattcaaaatcatttgggtatcaggaagaaaattttgagaaataaa
aaggagacaactaaaactgtaagtcattccaacgaagaaactggccagagtgaaactaga
acatctaacctaggcacagggcaaccagcttcaagaggacctcaaaaactctcatggact
gaagtcaggtctcccccggagagcgctaaagatgactttttaaggaagctggtttcccag
ccatttggtgggagacagagcggaaaaagaaagtcaagcatctcctccgttttagatcat
catgaactgcttttgccaacttctggcacatcagctgctgctaggtccaagggacaagtt
gtgcatgaagaaaagactcaaaacacaattgttcatggcaaagaagtttgtggtcaaaaa
gaagattgtatttcttttagcagtgcacacttagctttggataatgatactttcagtgct
ccatttcttaaggacgaaaagcgaattttaaagcatctgtcatccttcctcaatgtcaca
gactttcagttacctgatgaagattttgggctccttaaacttgaaaaactgaaatcttgc
tcagaaaagccagttgaaccttttgaatcaaagtatcaagaagaacagcttgagcttaaa
gaggaaaattgggtggttttggaggaacagactcctaaacaggtagataaagaaatggag
gacttggaggaggtacttagtccaccaagaaatgcgcatcttaaaacgtcatcgttgaga
aaacagcctctgaaggacctctcctcgtcgattttacttttcacccccgtaaatactgtt
gtaccggatgatgacagaccaacaagcctgtgttcacccacttttcccatcttgggcaca
accccagctctgctctcccaagcacactctgagaaaatgcctgcagagactattccacag
atgagctgtacaccttgtctctctcacacaaaagccacaagcagcccttgtggtaaacat
aacaggctgaccagctcaccgaaatgtgatggcatcctcgacgggtcaggtaggaaagga
cagcctgcctgtggtccaggctctcaagctacacctctgcctaccatgttagctgcttgc
gaagaaaatccactaaaagatctgtgcctggaacatgccactgaacagactgaccctgca
gaccttcctccttgtgataacttaaatccaggcagcctacagttggtttcaaagttgaag
aatccttcaggttcctgctctgtggatgtgagtgccttatggtgggaaatagctggtctc
aaagagccatgtataataactgcttgtgaatatgtagtttctttgtggaggcctctggat
accatgcaatgggaaaaagtttattcctggcactttacagaggttccagtattacaaata
gttccagtgcctggtctttgtagtcttgtatgtgtggctttgggaaatttggaaatcaga
gaaatcagggcattactttattcctcagatggtcacagtgaaaggcaagcactgctgagt
tctggaaatatcaaagctgtgcttggcttgacaaagagaaggctcgtcagtagccatggg
acccattgtgaccaacaagtggagatcctgacattttcagaagatggaggaagcaaggaa
aaacaatttttgatgccccctgaagagactatactaacttttgctgaggtccaagggatg
caagaagctctgcttggttccactataatgaacaacattgtgatttggaatttaaaaact
ggtcagcttctgaagaagatgaacattggtgattcctatcaggcctcagtctgtcacaga
gcctattctgagatggggctcctgtttattgttctgagtcatccgtgtgccaaagagagt
gagcccacgggaagccctgtgtttcagctgattgtgattaaccctaagacgaccctgagt
atgggagtgatgctctactgtcttcctcaggggcaggcgggaaggttcctggaaggggac
gtgaaggacagtcttgcagcagccgtattaacttctggaagaattgccgtttgggacttg
ctcttagggcattgcaccgttctccttccacctgtttctgaccaaaattggtccttcgtt
aaatggtcaggcacagattctcatttgttggctggacaaaaagatggcaatatatttgtg
taccgctactaa
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