Sorex fumeus (smoky shrew): 130046119
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Entry
130046119 CDS
T10594
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04064
NF-kappa B signaling pathway
sfum04514
Cell adhesion molecules
sfum04668
TNF signaling pathway
sfum04670
Leukocyte transendothelial migration
sfum04933
AGE-RAGE signaling pathway in diabetic complications
sfum05143
African trypanosomiasis
sfum05144
Malaria
sfum05417
Lipid and atherosclerosis
sfum05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
130046119 (VCAM1)
04668 TNF signaling pathway
130046119 (VCAM1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130046119 (VCAM1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
130046119 (VCAM1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
130046119 (VCAM1)
05143 African trypanosomiasis
130046119 (VCAM1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
130046119 (VCAM1)
05418 Fluid shear stress and atherosclerosis
130046119 (VCAM1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
130046119 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfum04515
]
130046119 (VCAM1)
04090 CD molecules [BR:
sfum04090
]
130046119 (VCAM1)
04091 Lectins [BR:
sfum04091
]
130046119 (VCAM1)
Cell adhesion molecules [BR:
sfum04515
]
Immunoglobulin superfamily
VCAM
130046119 (VCAM1)
CD molecules [BR:
sfum04090
]
Proteins
130046119 (VCAM1)
Lectins [BR:
sfum04091
]
I-type lectins (Siglecs)
130046119 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
C2-set
Ig_2
V-set
C2-set_2
ICAM_N
ICAM1_3_5_D2
C2-set_3
Ig_6
Ig_4
C1-set
Adhes-Ig_like
Lep_receptor_Ig
Motif
Other DBs
NCBI-GeneID:
130046119
NCBI-ProteinID:
XP_055994991
LinkDB
All DBs
Position
Unknown
AA seq
738 aa
AA seq
DB search
MPRKMAGIFGASNVLWMVFAASQAFKIKIFPEDKIVAQIGDSVSLTCSTTGCDSPTLSWR
TQIDSPLNAQTRHERTKSTLTMDPVSFENEHSYLCTAICESEKLEKVTQVEIYSFPKDPE
ISLSGPLEIGKPVTVTCSVADVYPFDRLEMELMKGNKLLKNQEFLDDMNSKSLETKSLEV
TFTPNKEDIGKFLVCRAKLHIDEIDSELRERETTKKLQVYISPKNTFIVVKPPGKLQEGD
SVTMTCVSEGLPAPQLFWSKKLENGDIQVLSENATLTLIAMRVEDSGIYICEGVNPGGKH
REEVELIVHEKPFTTEISPGPQVAAQIGDSLVLTCEARGCNSPSFSWRTQMDSPLGGMVT
SEGTKSTLTLSPVGFQHEHSYLCTVTCGQKKLEKGIQVELYSFPRDPEIELSDLLVTGNT
VTVSCKVQDVYPSDRLEIQLLKGERIMKNINFFEDIDKKSLETKSLDITFTPSMEDTGKV
LVCLAKLEIDEMEFEPKQRQSIHTLSVNVPPKDMNILVRPSSILEEGSSVNMTCSSDGFP
APKVLWSRQLSNGNLQPLSENTTVTLISAKMEDSGIYVCEGFYPAGISRKEIELIVQVAP
KDIQLTAFPSESVKEGDTVIISCTCGNIPKTWIILKKKAETGDTVLKSKDGAYTIHKAQL
GDAGVYECESKNEVGLQLRSLTLDVKGKEIKEYFSPELLVLYCASSLIIPAIGMIIYLAR
KANMKGSYSLVEAQKSKV
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcctaggaaaatggccgggatttttggagcctcaaatgtactttggatggtgtttgca
gcctctcaagcttttaaaattaagatctttcctgaagacaaaattgttgctcagattgga
gattcggtttcactgacttgtagcaccacaggctgtgactctccgactttgtcctggcga
actcagatagacagtccgctgaacgcccagacgagacatgaaaggactaagtctacactg
accatggatccagttagttttgagaatgaacactcgtatctgtgcacagcgatttgtgag
tctgaaaaactggaaaaagtaactcaggtggagatctactctttccctaaggacccagag
atctctttgagtggccctctggagattgggaagccagtcaccgtcacatgttcggttgct
gatgtttacccatttgacaggctggagatggaattaatgaagggcaacaaactcctgaag
aatcaggaatttctggacgatatgaattcaaagtctctggaaaccaaaagtttggaagta
acctttacccctaacaaagaggatattggaaaatttcttgtttgccgtgctaaattacac
attgatgaaattgattctgagctcagagaaagggagaccacaaaaaaactgcaagtctat
atctcacccaagaacacattcatagttgtgaagccccccggcaagcttcaagaaggtgac
tcggtaacaatgacatgtgtcagcgaaggtctaccagctcctcagcttttctggagcaag
aaactagagaatggggatatccaggtcctttctgagaacgcaactctcactttaattgct
atgagggtagaagattctggaatttatatatgtgaaggagttaatccaggtggaaaacac
agagaagaggtggaattaattgtgcatgagaagccgtttaccactgagatctcccctggg
ccccaggttgctgcacagattggagactcactggtgttgacatgtgaggccagaggctgc
aactccccatctttctcctggaggactcaaatggacagcccattgggtggaatggtaacg
agtgagggtaccaagtccacgctgaccctgagtcctgtgggttttcagcatgaacattct
tacctgtgcactgtgacatgtggacaaaagaaactggaaaagggaatccaggtggaactc
tactcattccctagagatccagaaattgaactgagtgatctactagtgactggcaataca
gtcactgtaagctgcaaggttcaggatgtatatccttcagatcggttagagattcaacta
ctgaagggggagagaattatgaagaatataaacttttttgaagacatagataagaaatct
ctagagaccaagagtttggacataaccttcactccttccatggaagatactggaaaagtt
cttgtgtgtctggctaagttagagattgatgaaatggagtttgaacccaaacaaaggcaa
agtatacacacactttctgttaatgttcctcccaaggatatgaacatcttggtgagaccc
tcttccatcctggaggaaggtagttctgtgaatatgacatgctctagtgatggatttcca
gctccaaaagtcctgtggagcaggcagctaagtaatggaaatctacagcctctttcagag
aatacaactgtcaccttgatttctgcaaaaatggaagattccggtatttatgtgtgtgaa
gggttttacccagctggaattagcagaaaagaaatagaattaattgtccaagttgctcca
aaagacatacaacttacagcttttccatctgaaagtgtcaaggaaggagacacagtaatt
atctcctgtacatgtggaaatattcctaaaacttggatcatcttgaagaaaaaagcagag
acgggagacactgtgctaaagtctaaagatggtgcatatactatccacaaagcccagtta
ggagatgcaggagtgtacgaatgtgaatctaaaaatgaggttggcttgcagttaaggagt
ctaacacttgatgttaaagggaaagaaattaaggagtacttttctcctgagcttcttgtg
ctctattgtgcatcctctttaataatacctgccattggaatgatcatttatcttgcaaga
aaagccaacatgaaagggtcctatagtcttgtagaagcacagaaatcaaaagtatag
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