Sorex fumeus (smoky shrew): 130046124 Help Entry 130046124         CDS       T10594                                  Symbol COL11A1 Name (RefSeq) collagen alpha-1(XI) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04820   Cytoskeleton in muscle cells sfum04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:sfum00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     130046124 (COL11A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     130046124 (COL11A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sfum00536]     130046124 (COL11A1) Glycosaminoglycan binding proteins [BR:sfum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130046124 (COL11A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  130046124 NCBI-ProteinID:  XP_055995000 LinkDB All DBs Position Unknown AA seq 1803 aa AA seqDB search MERWSSRWKTKRWLWDFTITALALAVLMQTRGVRGAPPVDVLKALDFHNSPEGITKTTGF CTNRKNSKGSDTAYRVSKLAQISAPTKQLFSGGTFPEDFSILFTVKPKKGIQSFLLSIYN EHGIQQIGVEVGRSPVFLYEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV DCKKKSTKPLGRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLITGDPRAAYDYCEHYS PDCDSSAPKASQAQEPQTDEYAPEDIMEYDYEYGEAEYKEAESITERPPVTEETIAQTEA NIVDDFQDYNYGTMGSYQTEAPRRVSGSNEPNPIEEVFTEEYLTGEDYGSQRKNSEDTLY ENKGIDGRDSDLLVDGDLGEYDFYEYEDKPTSPTNEEFGPGVPAETDFTETSINGHGAYG EKGQKGEPAVVEPGMLVEGPPGPAGPVGHMGPPGLQGPTGPPGDPGERGPPGRPGLPGAD GLPGPPGTMLMLPFRYGGDSSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPV GGPGSSGAKGESGDPGPQGPRGVQGPPGLTGKPGKRGRPGADGGRGMPGEPGAKGDRGFD GLPGLPGDKGHRGERGPQGPPGLPGDDGKRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPT GQPGIAGIDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKSGLA GLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGED GFPGFKGDMGLKGDRGEVGQLGPRGEDGPEGPKGRAGPSGDPGPSGQAGEKGKLGVPGLP GYPGRQGPKGSTGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGSRGARGPTGKPGPK GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPP GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPA GLRGFPGERGLPGAQGAAGLKGGEGPQGPPGPIGSPGERGSAGTAGPIGLPGRPGPQGPP GPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGQPGQKGSKGDK GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNP GPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGSEGRQGEKGAKGEA GAEGPVGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK GDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPP GLPGPQGPKGNKGSTGPAGQKGDGGLPGPPGPPGPPGEVIQPLPILSPKKARRHAESMQA DASDNILDYSDGMEEIFGSLDSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYW IDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRLSSWPKEKPGSWFSEFKRGKLLSY LDIEGNSINMVQMTFLKLLTASARQNFTYNCHQSAAWYDALTGSYDKALRFLGSNDEEIS YDNNPYIKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGAVC FLG NT seq 5412 nt NT seq  +upstreamnt  +downstreamnt atggagcggtggtcctcgaggtggaaaacgaaacggtggctctgggatttcaccatcaca gccttagcgttggcggtcctcatgcagaccagaggggtcagaggagctcctccagttgat gtactaaaagctctagatttccacaattctccagagggaataacaaaaacaacaggattt tgcacaaacagaaagaattcaaaaggttctgatactgcttacagagtttcaaagttagca caaatcagtgccccaacaaaacaattattttcaggaggaacttttccagaagatttttca atattatttacagtaaaacccaagaaaggaattcagtctttccttttatctatctacaat gagcatggtattcaacaaattggtgttgaggttgggagatcacctgttttcctttatgaa gaccacactggaaaaccagccccagaagattaccccctcttcagaactgttaatattgca gatgggaagtggcaccgagtagcaatcagtgtggaaaagaaaacagtaacaatgattgtt gattgtaagaagaaatccacaaaaccacttggcagaagtgagagggcaatcgttgacacc aatggaatcacagtttttggcacaaggattttggatgaagaagttttcgagggagacatc cagcagttactgatcacaggggaccccagagctgcttatgactactgtgagcactacagc ccagactgtgactcctcggcacccaaggcctctcaggcacaagaacctcagactgacgag tatgctcctgaggatataatggaatatgactatgagtatggggaagcagaatataaagag gctgagagtataactgagagaccccctgtaactgaggagacaatagcacagacggaggca aatatcgttgatgattttcaagactacaactatggaacgatgggaagttaccaaacagaa gctcctaggcgtgtctctggatcaaatgagccaaatccaattgaagaggtatttacggaa gaatatctaactggagaggattatggttcccagaggaaaaattccgaggatacactatat gaaaacaaaggaatagacggcagggactctgatctgctagtagatggagatttaggtgaa tatgacttttatgaatatgaagataagccaacaagtcccactaatgaagaatttggtcca ggtgttccagcagaaactgatttcacagaaacaagcataaatggacatggtgcttacgga gaaaagggacagaaaggagaaccagcagtagtggaacctggtatgcttgtagaaggacca ccaggaccagcaggaccagtgggtcatatgggtcctcctggtctgcagggccccactgga ccccctggtgaccctggagagaggggtcccccaggtcgtcctggcttacctggggctgat ggtctacctggtcctcctggtaccatgttaatgttaccgttccgttatggtggtgatagt tccaaaggaccgactatctctgctcaggaggctcaggcccaggcaattcttcagcaggct cggattgctctgagaggtccacctggaccaatgggtttaactggaagaccgggtccagtg ggagggccaggttcttctggggccaaaggtgagagtggtgatccaggtcctcagggccct cgtggtgttcaaggaccacctggtctgactggaaagcctggaaaaaggggtcgtccaggt gctgatggaggaagaggcatgccaggagaacctggggccaagggagatcgaggctttgat gggcttccaggtctgccaggtgataaaggccaccgaggtgaacgtggtcctcaaggtcct cctggtttgcctggtgatgatggaaagaggggagaagatggagaaattggaccaagaggt cttccaggtgaagctggtccaagaggtttgctgggacccagaggaacaccaggacccaca ggacaacctggcattgccggtatagatggccccccaggaccaaaaggaaacatgggtcct caaggggagcctggacctccagggcagcagggaaaccccggacctcaaggtcttcctggt cctcaaggtccaattggtcctcctggtgagaagggaccacagggcaaatcaggtcttgct ggacttccaggtgctgatggacctcctggccatcctggaaaagaaggacagtctggagaa aagggtgctctgggtcctcctggtccacagggacctattggctaccccggtccccgagga gtaaagggagcagacggtgtcagaggtctcaagggctctaaaggtgaaaagggtgaagat ggttttccaggattcaaaggagacatggggcttaaaggtgacagaggagaagttggtcag ttaggtccaagaggagaagacggtcctgaaggccccaaaggtcgggcaggtccatctgga gatcctggtccttctggtcaagcaggagagaaggggaagcttggcgttccaggattgcca ggatatcctggtagacaaggtccaaaggggtctactggatttcctgggtttcctggtgct aatggagagaaaggtgctcggggcatcgctggcaagccaggtcctcggggtcagcgtggt ccaacgggtccgcgaggttcaagaggagcgagaggtcctacagggaaacctggtccaaag ggcacctcgggtggtgatggtcctcctggtcctccaggtgaaagaggacctcaaggacct caggggccagttggattccctggaccaaaaggccctcctggaccacctggaaaggatgga ctgccgggtcatcctgggcaacgtggagaaacaggatttcaaggcaagacaggtcctcct gggccaggcggtgttgttggaccacaggggcccactggggagacaggtccaataggtgaa cgtggacatcctggtcctcctggtcctcctggagagcaaggtcttcccggtgctgcagga aaagaaggtgcaaagggtgaccctggtcctcaaggtgtctcagggaaagacggaccagct ggactgcgtggttttccaggtgaaagaggacttccaggagctcagggtgccgcaggacta aaaggaggagaaggtccccagggcccaccaggtccaattggctcaccaggagaacgcggg tcagcaggtaccgctggtccaattggtttgccaggccgtccaggaccccagggtcctcct ggtcctgctggagagaaaggtgcccctggagaaaaaggtcctcaaggcccagctggtaga gatggaatacaaggtcctgtgggtctccctgggcctgctggaccagctggttcccctgga gaagatggagacaagggtgaaattggtcaaccagggcaaaaaggcagcaaaggtgacaaa ggagaaaatggtcctcctggtcctcccggacttcaaggacccgttggtgccccgggaatt gcaggaggagatggtgagccaggtcccagaggacagcaggggatgtttggtcagaaaggt gatgagggcgccagaggcttcccaggcccacctggccccataggtcttcagggtcttcca ggcccacctggtgaaaaaggtgaaaatggtgatgttggtcctatgggtccgcctggtcct ccaggcccaagaggtcctcaaggtccaaatggagccgatggaccacaagggcccccagga tccataggctcagtgggtggcgttggagaaaagggtgaaccaggagaagctggaaaccca gggcctcctggtgaagcaggcactggtggtcccaaaggagaaagaggagagaaaggagaa gctggtcctcctggggctgctggaccccctggtgctaaaggacctccaggggatgatggt cctaagggtaacccgggtcctgttggtttccccggagatcctggtccccctggtgagcct ggccctgcaggtcaagatggtgttggtggtgataaaggagaagatggagatcctggccag ccgggtcctcctggtccatctggtgaggctggcccaccgggtccccctgggaaaagaggt ccgcctggagctacaggttcagagggaagacaaggcgaaaagggtgctaagggtgaagca ggtgctgaaggtcccgttggaaaaactggcccagttggtcctcagggacctgcaggaaag cctggtccagaagggcttcgaggcatccctggtcctgtgggagagcaaggtctccctgga gctgctggccaagacggaccacctgggcccatgggacctcctggcttgcctggtctcaaa ggagatcctggatccaagggtgaaaagggacatcctggtttaattggcttgattggtcct ccaggagagcaaggcgaaaagggtgacagaggacttcctggaactcaaggatctccagga gcaaagggagatgggggaattccaggacctgctggtcccataggtccacctggtcctccg ggtttaccaggtcctcaaggtccaaagggtaacaaaggttctactggacctgctggccag aagggtgacggtggtcttcctgggcccccagggcctcctggcccacctggtgaagtcatt cagcctttaccaattttgtcaccaaaaaaagcaagaagacatgctgaaagcatgcaagca gatgcaagtgataatattcttgactactcagatggaatggaggaaatatttggttctctc gattccctgaaacaagacattgaacatatgaaatttccaatgggcactcagaccaaccct gctcggacttgcaaagatctgcagctaagtcatcctgacttcccagatggtgaatattgg attgaccctaatcaaggctgctcaggagattccttcaaagtttattgtaatttcacatct ggtggtgagacttgcatttatccagacaaaaaatctgagggagtaagactttcatcatgg ccaaaggagaaaccgggaagctggtttagtgaatttaagagaggaaaactgctttcatac ttggatattgaaggcaattctattaatatggtgcaaatgacattcctgaaactgctgact gcctctgcaaggcaaaatttcacctacaactgtcatcagtcagcagcctggtatgatgcg ttaacaggaagttatgacaaagcacttagatttttgggatcaaatgatgaggagatatcc tatgataacaacccttacatcaaagcattgtatgatggctgtgcttccagaaaaggatat gaaaagactgtgattgaaatcaacacaccaaaaattgatcaagtacctatagttgatgta atgatcaatgactttggtgatcaaaatcaaaagtttggatttgaagttggtgctgtttgt tttcttggctga

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