Shigella flexneri 8401 (serotype 5b): SFV_0686
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Entry
SFV_0686 CDS
T00377
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv03030
DNA replication
sfv03430
Mismatch repair
sfv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFV_0686 (holA)
03430 Mismatch repair
SFV_0686 (holA)
03440 Homologous recombination
SFV_0686 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfv03032
]
SFV_0686 (holA)
03400 DNA repair and recombination proteins [BR:
sfv03400
]
SFV_0686 (holA)
Enzymes [BR:
sfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SFV_0686 (holA)
DNA replication proteins [BR:
sfv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SFV_0686 (holA)
DNA repair and recombination proteins [BR:
sfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SFV_0686 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
ABF02926
UniProt:
Q0T6Q0
LinkDB
All DBs
Position
723401..724432
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AA seq
343 aa
AA seq
DB search
MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTD
WNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKA
QENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRTKQLNLELDDAANQVLCYCYEGNLLA
LAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEG
SEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQPQLRQ
AVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLADVFIDG
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgattcggttgtacccggaacaactccgcgcgcagctcaatgaagggctgcgcgcggcg
tatcttttacttggtaacgatcctctgttattgcaggaaagccaggacgctgttcgccag
gtagctgcggcacaaggattcgaagaacaccacactttttccattgatcccaacactgac
tggaatgcgatcttttcgttatgccaggctatgagtctgtttgccagtcgacaaacgcta
ttgctgttgttaccagaaaacggaccgaatgcggcgatcaatgaacaacttctcacactc
accggacttctgcatgacgacctgctgttgatcgtccgcggtaataaattaagcaaagcg
caagaaaatgccgcctggtttactgctcttgcgaatcgcagcgtgcaggtgacctgtcag
acaccggagcaggctcagcttccccgctgggttgctgtgcgcacaaaacagctcaactta
gaactggatgacgcggcgaatcaggtgctctgctactgttatgaaggtaacctgctggcg
ctggctcaggcactggagcgtttatcgctgctctggccagacggcaaactgacattaccg
cgcgttgaacaggcggtgaatgatgccgcgcatttcaccccttttcattgggttgatgct
ttgttgatgggaaaaagtaagcgcgcgttgcatattcttcagcaactgcgtctggaaggc
agcgagccggttattttgttgcgcacattacaacgtgaactgttgttactggttaacctg
aaacgccagtctgcccatacgccactgcgtgcgttgtttgataagcatcgggtatggcag
aaccgccggggcatgatgggcgaggcgttaaatcgcttaagtcagccgcagttacgtcag
gccgtgcaactcctgacacgaacggaactcaccctcaaacaagattacggtcagtcagta
tgggcagagctggaagggttatctcttctgttgtgccataaacccctggcggacgtattt
atcgacggttga
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