Shigella flexneri 8401 (serotype 5b): SFV_1134
Help
Entry
SFV_1134 CDS
T00377
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SFV_1134 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfv03400
]
SFV_1134 (mfd)
Enzymes [BR:
sfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFV_1134 (mfd)
DNA repair and recombination proteins [BR:
sfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SFV_1134 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABF03343
UniProt:
Q0T5S2
LinkDB
All DBs
Position
complement(1176339..1179848)
Genome browser
AA seq
1169 aa
AA seq
DB search
MLIRDMPPYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHA
GPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP
TMQRGILIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH
GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT
DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN
TLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL
KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG
ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKARNLALICESDLLGERVARRRQ
DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL
YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE
GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM
RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV
AEGKIDILIGTHKLLQSDVKFKDLGLLIADEEHRFGVRHKERIKAMRANVDILTLTATPI
PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDV
ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT
ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL
GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS
QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART
LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL
KFIQDLSERKTRIEWVRQFMRELEENAIA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttgcttatcagagatatgcccccatatgttgaggcatatcctaacgagaatctgacaacc
gttatgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctg
ggcgagttaaccggcgcagcctgtgcaacgctggtagcggaaattgccgaacgtcacgcc
ggtccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatc
agccagttcaccgatcagatggtgatgaatctggcggactgggaaactcttccctacgac
agtttttcgcctcatcaggacattatctcctcgcgcctttccaccctttaccagctaccg
acgatgcagcgtggcatactgattgttccggtgaatacgcttatgcagcgcgtttgccca
cacagttttctccacggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagat
gcattacgaacccaactggacagcgccggttatcgccatgttgaccaggtgatggagcac
ggcgaatacgccacgcgcggcgcgttgctggatctcttcccgatggggagtgagctgcct
tatcgtcttgatttctttgatgatgaaatcgacagcctgcgggtgtttgacgtcgacagc
cagcgcacgctggaggaagtagaagcgatcaatctgctgcccgcgcacgaatttccgacc
gataaagcggcaattgaactgttccgcagccagtggcgcgataccttcgaagtgaagcgc
gatccggaacatatttaccagcaagtgagtaaaggcacattacctgccgggatcgagtac
tggcagccattgttcttcagcgaaccactgccgccgctgttcagttatttccctgccaat
accttgctcgtgaatactggcgatctggaaaccagtgccgaacgtttccaggctgacacg
ctggcgcgttttgagaatcgcggcgtcgatccgatgcgcccgctgttgccaccacaatcg
ctctggctgcgggtggacgagctcttctcagagctgaaaaactggccccgagtgcagcta
aaaactgaacatttaccgacaaaagccgcgaatgccaatttaggtttccagaaactgcca
gacctggccgttcaggcgcaacaaaaagcgccgctggatgcgctgcgtaagttcctcgag
actttcgacggtccggtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggt
gaactgctcgcacgaattaaaattgctccgcaacgcattatgcgtcttgatgaagccagc
gaccgtgggcgttatctgatgattggcgctgccgaacatggttttgtcgataaggcgcgt
aatctggcgctgatctgcgaaagcgatctgctcggtgaacgtgttgcccgccgtcgtcag
gattctcgccgcaccatcaaccccgatacactgatccgtaaccttgcggagctgcatatt
ggtcagccggtggtccatctggagcacggcgtcggtcgctatgccggaatgaccacgctg
gaagctggcggcattactggcgagtacctgatgctcacctatgccaacgacgccaaactg
tatgttccggtgtcgtcactgcatctgattagccgttacgcaggtggcgcggaagaaaac
gccccgctgcataaacttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaa
aaagtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgccgccaaagag
ggcttcgcgtttaaacacgatcgtgagcagtatcagttattctgcgacagcttcccgttt
gaaaccacgccggatcaggcgcaggccattaatgcggtacttagcgacatgtgtcagccg
ctggcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatg
cgcgccgctttcctggcagtagataaccacaagcaggtagcggtgttggtgcctaccacc
cttcttgcgcagcagcattacgacaatttccgcgaccgtttcgccaactggccggtacgt
atcgaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtg
gcggaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaagtgacgtcaag
tttaaagatttaggcctgctgattgccgatgaagaacaccgcttcggggtgcgtcataaa
gagcgcattaaagcgatgcgcgcgaacgtggatattctgacacttactgcaacgccgatc
ccacgtacgctgaatatggcaatgagcggaatgcgtgacctgtcgattatcgccacgccg
cccgcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagcctggtggtccgg
gaggcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctacaatgatgtg
gaaaacattcagaaagccgccgaacggctggcagaactggtgcctgaagcacggattgcc
atcggtcacgggcagatgcgcgagcgcgaactggaacgggtgatgaatgatttccatcat
caacgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgacatcccgaca
gccaacaccattatcattgaacgtgcggatcacttcggtctggcgcagctgcaccagtta
cgcggtcgcgtcggacgttcacatcatcaggcatatgcatggctgctgacgccgcatcca
aaagcgatgactaccgatgcacaaaaacgtcttgaagcgattgcctcgctggaagatctc
ggggcaggttttgcgctggcaacgcacgatctggagattcgcggcgcgggtgaactgctt
ggcgaagaacaaagcggctcaatggaaaccatcggtttctcgctgtatatggagttgctg
gaaaacgccgtcgatgcactgaaagccggacgcgagccgtcgctggaagatctcaccagc
cagcaaacagaagtcgagctgcggatgccgtcgctattgccagatgatttcatccctgac
gtgaacacgcgtctgtcgttctacaaacgtattgccagcgccaaaacggaaaacgaactg
gaagagatcaaagtcgagcttatcgatcgcttcggcctgctgccagatccggcgcgtacc
ctgctggatattgcccgtctgcgccagcaagcgcagaaactggggatcaggaagctggaa
ggtaatgagaaaggcggggtgatcgaatttgccgagaagaatcacgttaatccggcctgg
ttgattggtttgctgcaaaaacagccgcagcattaccgccttgatggtccgacgcgcctg
aaatttattcaggatttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatg
cgtgaactggaagagaacgcgatcgcttaa
DBGET
integrated database retrieval system
