Shigella flexneri 8401 (serotype 5b): SFV_1710
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Entry
SFV_1710 CDS
T00377
Symbol
ydiJ
Name
(GenBank) putative oxidase
KO
K26063
(R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv00310
Lysine degradation
sfv01100
Metabolic pathways
sfv01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
SFV_1710 (ydiJ)
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GFIT
Motif
Pfam:
FAD-oxidase_C
FAD_binding_4
Fer4_8
BBE
Fer4_20
Fer4_17
Fer4_18
Fer4_10
Motif
Other DBs
NCBI-ProteinID:
ABF03879
UniProt:
Q0T486
LinkDB
All DBs
Position
complement(1745523..1748579)
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AA seq
1018 aa
AA seq
DB search
MIPQISLAPGVVQLVLNFLQELEQQGFTGDAATSYADRLTMSTDNSIYQLLPDAVVFPRS
TADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVDMSRHMNRIIEINPEEGWV
RVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGV
RAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVYQRCRQQRQLIIDNFPKLNRFLT
GYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARLDITRLPKVRRLVNVKYDSFDSALR
NAPFMVEARALSVETVDSKVLNLAREDIVWHSVSELITDVPDKEMLGLNIVEFAGDDEAL
IDERVNALCVRLDELIASQQAGVIGWQVCRELAGVERIYAMRKKAVGLLGNAKGAAKPIP
FAEDTCVPPEHLADYIAEFRALLDSHGLSYGMFGHVDAGVLHVRPALDMCDPQQEILMKQ
ISDDVVALTAKYGGLLWGEHGKGFRAEYSPAFFGEELFAELRKVKAAFDPHNRLNPGKIC
PPEGLDAPMMKVDAVKRGTFDRQIPIAVRQQWRGAMECNGNGLCFNFDARSPMCPSMKIT
QNRIHSPKGRATLVREWLRLLADRGVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEY
DFSHEVKEAMSGCLACKACSTQCPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYA
PLMARAPKTFNFFINQPLVRKLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLEAL
NAEQKARTVLVVQDPFTSYYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRF
AKTAKKTADFLNRMAKLGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASAL
ESHPVATVSGESWYFFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHE
AKNHENSLGIYELSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgattccacagatttccctggcacccggcgtcgttcaactggtgcttaattttttgcaa
gagctggagcaacaaggttttaccggcgatgcggcgacaagttatgccgatcgtctgaca
atgtcgaccgacaacagtatttaccaacttctccccgatgcggtggtatttccgcgttca
accgcagatgtggcgctgatcgcccgtcttgccgcgcaggaacgctattcatcgctgatc
tttaccccccgcggcggcggcaccggcactaacggtcaggcgctcaaccaggggattatt
gttgatatgtcccgccatatgaaccgcatcatcgaaattaaccctgaagagggctgggtg
cgcgttgaggccggggtgataaaagaccaactcaatcagtacctgaaaccgttcggctac
ttttttgcgccggaactttcgaccagcaaccgggcaacgctcggtgggatgatcaatacc
gatgcatccggtcagggatcgctggtctatggcaaaacgtcagatcacgtacttggcgta
cgcgcggtgttgttggggggcgatattctcgatacgcaacctttacccgtcgagctggcg
gaaacgctgggtaaatccaataccacaatcgggcgaatttataacacggtttatcaacgt
tgccgtcagcaacgccagttaatcatcgacaacttccccaaacttaaccgctttcttacc
ggttacgatctgcgtcatgtctttaacgatgagatgaccgagttcgacctgacgcgcatt
ctgacgggttcagaagggacgctggcctttattaccgaagcgcggctggatattacgcgc
ttgcctaaagtgcgccgtctggtgaatgtcaaatatgactcttttgactctgcgctgcgt
aacgcgccgtttatggttgaggcgcgggcgctttcggtagagacggtggactcaaaagtg
ctgaatctggcgcgggaagatattgtctggcattccgtcagcgagttgattaccgatgtg
cctgacaaagagatgctcggactgaacattgtggaatttgctggtgatgatgaggcgctg
attgacgagcgagttaatgcactctgtgtgcggcttgatgagctgattgccagccaacag
gcaggtgtgattggctggcaggtgtgccgcgagctggcgggggttgaacgtatctatgcg
atgcgcaaaaaagccgttggtctgcttggcaatgccaaaggtgccgctaagccaattccg
tttgctgaggatacctgcgtaccgccggaacatctggccgattatattgctgaatttcgc
gcgctgctcgacagccacggcttaagctacggtatgttcggtcacgtcgacgcaggtgtc
ttgcacgtccgtccggcactggatatgtgcgatccgcaacaagagattttgatgaagcaa
atctctgatgacgtggtggcgctgactgcgaaatacggtggtttgttgtggggcgagcac
ggcaaaggttttcgcgctgaatacagcccggcgtttttcggtgaggaactttttgcagaa
ctgcgcaaagtgaaagcggcatttgacccgcataaccgactcaacccagggaagatttgc
ccgccagaaggtctcgatgcgccgatgatgaaagtggacgcggtgaagcgcggtacattc
gatcggcagatccccattgcggtacgccagcagtggcgcggtgcgatggagtgtaacggc
aacggtttatgcttcaactttgatgcccgtagtccgatgtgtccgtcgatgaagatcacc
cagaaccggattcattcaccgaaagggcgcgcaacgctggtgcgtgaatggctgcgcttg
ttggcggatcgcggcgttgacccactcaaactggaacaagaactgcctgaatccggcgtc
agtttgcggacgttaattgcccgcacgcgcaatagctggcatgcgaataaaggcgaatat
gacttctcacacgaagtcaaagaggcgatgtcgggctgtctggcctgtaaagcttgttcg
acccagtgccccatcaaaattgatgtgccggagtttcgctctcgttttctgcagctctat
cacacccgttatttacgcccgcttcgcgaccacctcgttgctacggtcgagagctacgca
ccgctgatggcacgcgcgccgaaaacctttaacttcttcattaaccagccgctggtgcgc
aaactctcggaaaaacatatcggcatggttgatttgccactgctgtcggtcccctcgcta
caacaacaaatggtggggcatcgctcggcaaacatgacgctggaacagcttgaagctctc
aatgcagagcagaaagcgcgcacggtgttggtggtgcaggacccctttaccagctattac
gatgcgcaagtggtggcggattttgtccgtctggttgaaaaattaggtttccagcctgtg
ttactgccattttcgccaaatggcaaagcccagcatatcaaaggctttcttaatcgtttt
gcgaagacggcgaaaaagacggcggatttcctcaaccgtatggctaagcttgggatgcca
atggtgggcgtcgatccggcgctggtactttgttatcgcgatgaatataaactggcgctg
ggcgaggaacgtggcgagtttaacgtcttacttgcgaatgaatggctggcaagcgcactt
gagtcacatccagtggctacagtcagcggtgaatcatggtatttctttggtcactgtacc
gaggttaccgctttgccgggcgcgccagcacaatgggccgcgatatttgcccgttttggc
gcgaaactggaaaatgtcagcgtgggttgctgcggcatggcagggacttacggacatgaa
gcgaaaaaccatgaaaattcgctcgggatctatgagttatcctggcatcaggctatgcag
cgactgccgcgtaaccgctgtctggcgaccggatattcctgccgtagccaggtaaaacgg
gttgaaggcacgggggtacgccatcctgtgcaggctttactggagattattaaatga
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