Shigella flexneri 8401 (serotype 5b): SFV_2070
Help
Entry
SFV_2070 CDS
T00377
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SFV_2070 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfv03400
]
SFV_2070 (sbcB)
Enzymes [BR:
sfv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SFV_2070 (sbcB)
DNA repair and recombination proteins [BR:
sfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SFV_2070 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SFV_2070 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SFV_2070 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ABF04198
UniProt:
Q0T3B7
LinkDB
All DBs
Position
2090239..2091663
Genome browser
AA seq
474 aa
AA seq
DB search
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRP
GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY
DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMADLAGDISPLLELDIDTLRELLYTAKADLGDNAAVPVKLV
HIDKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD
NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY
AEQQRWLEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacagataaacaacctaccttcctctttcacgattacgaaacctttggcacg
caccccgcgttagatcgccctgcacagttcgcagccattcgcaccgatgacgaattcaat
gtcatcggcgaacccgaagtcttttactgcaagcccgcggatgactatttaccccggcct
ggagcagtattaattaccggtattaccccgcaggaggcacgggcgaaaggagaaaacgaa
gccgcgtttgccgcccgtattcactcgctttttaccgtaccgaagacctgtattctgggc
tacaacaatgtgcgtttcgacgacgaagtcacacgcaacgttttttatcgtaatttctac
gatccttacgcctggagctggcagcatgataactcgcgctgggatttactggatgttatg
cgtgcctgttatgccctgcgcccggaaggaataaactggcctgaaaatgatgacggtcta
ccgagctttcgccttgagcatttaaccaaagcgaatggtattgaacatagcaacgcccac
gatgcgatggctgatgtgtacgccactattgcgatggcgaaactggtaaaaacgcgtcag
ccacgcctgtttgattatctctttacccatcgtaataaacacaaactgatggcgttgatt
gatgttccgcagatgaaacccctggctcacgtttccggaatgtttggggcatggcgtggc
aataccagctgggtggcaccgctggcgtggcatcctgaaaatcgcaatgccgtaattatg
gcggatttggcaggagacatttcgccattactggagctggatatcgacacattgcgcgag
ctgttatataccgcaaaagccgatcttggcgataacgccgccgttccggttaagctggtg
catatcgataaatgtccggtactggcccaggcgaatacgctacgcccggaagatgccgac
cgactgggaattaatcgtcagcattgcctcgataacctaaaaattctgcgtgaaaatccg
caagtgcgtgaaaaagtggtagcgatattcgcggaagccgaaccatttacaccttcagat
aatgtggatgcacagctttataatggctttttcagtgacgccgatcgtgcagcaatgaaa
attgtgctggaaaccgagccgcgtaatttaccggcactggatatcacttttgttgataaa
cgaattgaaaagttgttgttcaattatcgggcacgcaacttcccggggacgctggattat
gccgagcagcaacgctggctggagcaccgccaccaggtcttcacgccagagtttttgcag
ggttatgctgatgaattgcagatgctggtacaacaatatgccgatgacaaagagaaagtg
gcgctgttaaaagcactttggcagtacgcggaagagatcgtctaa
DBGET
integrated database retrieval system
