Shigella flexneri 8401 (serotype 5b): SFV_2940
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Entry
SFV_2940 CDS
T00377
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv03410
Base excision repair
sfv03430
Mismatch repair
sfv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SFV_2940 (recJ)
03430 Mismatch repair
SFV_2940 (recJ)
03440 Homologous recombination
SFV_2940 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfv03400
]
SFV_2940 (recJ)
DNA repair and recombination proteins [BR:
sfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SFV_2940 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SFV_2940 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFV_2940 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
ABF05010
UniProt:
Q0T105
LinkDB
All DBs
Position
complement(3008892..3010484)
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AA seq
530 aa
AA seq
DB search
MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLV
PNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT
LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLD
LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL
GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKL
ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH
MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLAPSLLQGEVV
SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGG
PLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgttgccctggcagcaactaagcggtgtcgaaaaggccgttgagatcctttacaacgct
tttcgcgaaggaacgcggattattgtggtcggtgatttcgacgccgacggcgcgaccagc
acggctctaagcgtgctggcgatgcgctcgcttggttgcagcaatatcgactacctggta
ccaaaccgtttcgaagacggttacggcttaagcccggaagtggtcgatcaggcccatgcc
cgtggcgcgcagttaattgtcacggtggataacggtatttcctcccatgcgggagttgag
cacgctcgctcgttgggcatcccggttattgttaccgatcaccatttgccgggcgacaca
ttacccgcggcggaagcgatcattaaccctaacttgcgcgactgtaatttcccgtcgaaa
tcactggcaggcgtgggtgtggcgttttatctgatgctggcgctgcgcacctttttgcgc
gatcagggctggtttgatgagcgcggcatcgcaattcctaacctggcagaactgctggat
ctggtcgcgctggggacagtggcggacgtcgtgccgctggacgctaataatcgcattctg
acctggcaggggatgagtcgcatccgtgccggaaagtgccgtccagggattaaagcgctg
ctggaagtggcaaatcgcgatgcacaaaaactcgccgccagcgatttaggttttgcgctg
ggaccgcgtctcaatgctgccgggcgactggatgatatgtccgttggtgtggcgctgttg
ctgtgcgacaacatcggcgaagcgcgcgtgctggcaaatgaactcgatgcgctaaaccag
acgcgaaaagagatcgaacaaggaatgcaggttgaagccctgaccctgtgcgagaaactg
gagcgcagccgtgacacgctacccggcgggctggcaatgtatcaccccgaatggcatcag
ggcgttgtcggtattctggcttcgcgtatcaaagagcgttttcaccgtccggttatcgcc
tttgcgccagcaggtgacggtacgctgaaaggttccggtcgctccattcaggggctgcat
atgcgtgatgcgctggagcgattagacacactctaccccggcatgatgctcaagtttggc
ggtcatgcgatggcggcgggtttgtcgctggaagaggataaattcgaactctttcaacaa
cggtttggcgaactggttactgagtggctggccccttcgctattgcaaggcgaagtggtg
tcagacggtccgttaagcccggccgaaatgaccatggaagtggcgcagctgctgcgcgat
gctggcccgtgggggcagatgttcccggagccgctgtttgacggtcatttccgtctgctg
caacagcggctggtgggcgaacgtcatttgaaggtgatggtcgaaccggtcggcggcggt
ccactgctggatggtattgcttttaatgtcgataccgctctctggccggataacggcgtg
cgcgaagtgcaactggcttataagctcgatatcaacgagtttcgcggcaaccgcagcctg
caaattatcatcgacaatatctggccaatttag
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