Shigella flexneri 8401 (serotype 5b): SFV_3227
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Entry
SFV_3227 CDS
T00377
Symbol
yrbH
Name
(GenBank) putative isomerase
KO
K06041
arabinose-5-phosphate isomerase [EC:
5.3.1.13
]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv00541
Biosynthesis of various nucleotide sugars
sfv01100
Metabolic pathways
sfv01250
Biosynthesis of nucleotide sugars
Module
sfv_M00063
CMP-3-deoxy-D-manno-octulosonate biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SFV_3227 (yrbH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sfv01005
]
SFV_3227 (yrbH)
Enzymes [BR:
sfv01000
]
5. Isomerases
5.3 Intramolecular oxidoreductases
5.3.1 Interconverting aldoses and ketoses, and related compounds
5.3.1.13 arabinose-5-phosphate isomerase
SFV_3227 (yrbH)
Lipopolysaccharide biosynthesis proteins [BR:
sfv01005
]
Lipid A
SFV_3227 (yrbH)
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Gene cluster
GFIT
Motif
Pfam:
SIS
CBS
SIS_2
DUF2529
Motif
Other DBs
NCBI-ProteinID:
ABF05278
UniProt:
Q0T087
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All DBs
Position
3297071..3298078
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AA seq
335 aa
AA seq
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MNNWKRIMSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVV
VMGMGKSGHIGRKMAATFASTGTPSFFVHPSEAAHGDLGMVTPQDVVIAISNSGESSEIT
ALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDA
LAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVT
RKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEA
LNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
ttgaataactggaaacgcattatgtcgcacgtagagttacaaccgggttttgactttcag
caagcaggtaaagaagtcctggcgattgaacgtgaatgcctggcggagcttgatcaatac
atcaatcagaatttcacgcttgcctgtgaaaagatgttctggtgtaaagggaaagttgtc
gtcatggggatggggaaatcggggcacatcgggcgcaaaatggccgcaacgtttgccagc
accggtacaccttcatttttcgtccatcctagtgaagccgcgcatggtgatttaggcatg
gtcaccccacaggatgtggtgattgctatctctaactcaggtgaatccagcgaaatcacg
gccttaattccagtgcttaagcgtcttcacgtaccgttaatctgcatcaccggtcgcccg
gagagcagcatggcgcgcgccgcagatgtgcatctgtgtgttaaagtagcgaaagaagcc
tgtccgttagggctggcaccgaccagcagcaccaccgccacgctggttatgggcgatgcc
ctcgctgtcgcgctgttaaaagcacgcggctttactgctgaagattttgcgctctcacac
ccaggcggcgcactgggtcgtaaacttctgctgcgcgtaaacgatattatgcatacgggc
gatgagatcccgcatgttaagaaaacggccagtctgcgtgacgcattgctggaagttacc
cgcaaaaatcttggtatgactgtcatttgcgatgacaatatgatgattgaaggcatcttt
accgacggtgatttacgccgtgtcttcgatatgggcgtggatgttcgtcagttaagtatt
gccgatgtgatgacgccggggggaatacgtgtgcgccctggcattctggccgttgaggca
ctgaacttaatgcagtcccgccatatcacctccgtgatggttgccgatggcgaccattta
ctcggtgtgttacatatgcatgatttactgcgtgcaggcgtagtgtaa
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