Shigella flexneri 8401 (serotype 5b): SFV_3273
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Entry
SFV_3273 CDS
T00377
Symbol
cafA
Name
(GenBank) bundles of cytoplasmic filaments
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfv03019
]
SFV_3273 (cafA)
03009 Ribosome biogenesis [BR:
sfv03009
]
SFV_3273 (cafA)
Messenger RNA biogenesis [BR:
sfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SFV_3273 (cafA)
Ribosome biogenesis [BR:
sfv03009
]
Prokaryotic type
rRNA processing factors
SFV_3273 (cafA)
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Ortholog
Paralog
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Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABF05323
UniProt:
Q0T042
LinkDB
All DBs
Position
complement(3346575..3348044)
Genome browser
AA seq
489 aa
AA seq
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MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI
GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT
TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA
ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE
ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM
TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV
LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV
CYEIMREIVRVHHAYDSDSFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN
QEQFDVVMM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgaattgttagtaaacgtaacgccttcggaaacgcgagtggcgtatattgat
ggcggtattctgcaggaaattcatattgaacgtgaggcgcgacgcggaatagtaggcaat
atctacaagggtcgtgtaagtcgtgtacttccgggtatgcaggcggcttttgtagatatt
gggctggataaagccgcgtttcttcatgcatccgacatcatgccgcataccgaatgtgtg
gcgggtgaagaacaaaagcaattcacggtgcgcgacatctcggaactggttcgtcagggg
caagatctgatggtgcaggtggtgaaagatccgcttggcactaaaggtgcgcgcctgacc
accgatatcacgctgccttctcgctatctggtatttatgccaggggcttctcacgttggg
gtttcccaacgaattgaaagcgaatcagaacgtgaacgcctgaaaaaagtggtcgcagag
tattgcgacgagcagggcgggtttatcatccgcaccgcagcggaaggggttggcgaggct
gaactggcctccgatgccgcttatctgaaacgcgtctggaccaaagttatggagcgtaaa
aagcgcccgcagacccgttatcagctgtacggcgaactggcgctggcgcagcgtgttctg
cgtgattttgccgacgccgaactggaccgcattcgcgttgactcacgcctgacttacgaa
gcattgctggagtttacctcggagtacattcccgagatgaccagcaagctggagcattac
accggacgccagccgattttcgatctctttgatgtcgaaaacgaaatccagcgagcgttg
gaacgcaaagtagaactgaaatccggtggttatctgattatcgaccagaccgaagcgatg
accaccgtggacatcaataccggagcgtttgtcggtcatcgcaatctggacgacactatt
ttcaataccaatattgaagcgacgcaggctatcgctcgccagttacggttgcgtaatctg
ggcgggattatcattattgatttcatcgatatgaataatgaagatcaccgccgccgcgtg
ctgcattcgctggagcaggcgttgagcaaagaccgggtgaaaaccagcgttaatggtttt
tcggcgctggggctggtggagatgacgcgtaaacgcacccgcgaaagcattgagcacgta
ctgtgtaacgaatgcccaacctgccacggtcgcggaacggtgaaaaccgtggaaacggta
tgctatgaaatcatgcgcgagattgttcgtgtccaccatgcttacgactccgacagtttc
ctggtctatgcttctccggcagtagccgaagccttgaaaggcgaagagtcacactcgctg
gcggaagtggaaattttcgttggcaaacaggttaaagtacaaattgaaccgctctataac
caggagcagtttgacgtcgtaatgatgtaa
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