Shigella flexneri 8401 (serotype 5b): SFV_3676
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Entry
SFV_3676 CDS
T00377
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFV_3676 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfv03019
]
SFV_3676 (recQ)
03400 DNA repair and recombination proteins [BR:
sfv03400
]
SFV_3676 (recQ)
Enzymes [BR:
sfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFV_3676 (recQ)
Messenger RNA biogenesis [BR:
sfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SFV_3676 (recQ)
DNA repair and recombination proteins [BR:
sfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SFV_3676 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABF05701
UniProt:
Q0SZ14
LinkDB
All DBs
Position
complement(3762833..3764662)
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL
TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaagaaacc
tttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctttccggt
cgcgattgcctggttgttatgcccactggtggcggaaaatccctttgctatcaaattcct
gccttattgctaaacggccttaccgtggttgtttcaccgctgatttcgttgatgaaagat
caggtggatcaactacaggccaacggcgtggcggcggcgtgccttaactcgacgcaaacc
cgcgaacagcaacttgaagtgatgacaggctgccgcaccgggcaaattcgcttactgtat
atcgccccggaacgcctgatgctggataactttcttgagcatctggcgcactggaatccg
gtgttattagccgtcgatgaagcgcactgtatctcccaatggggccacgatttccgcccg
gaatatgccgcgctcggtcagttgcgccagcggttcccgacgctgccgtttatggcgctg
accgccacagccgacgacaccacgcgccaggatatcgtgcgcctgctggggctgaacgat
ccgctgattcaaatcagcagttttgaccgtccgaatattcgctacatgctgatggagaaa
ttcaaaccgctcgatcagttgatgcgctacgtgcaggaacagcgcggtaagtctggcatt
atctactgcaacagccgggcgaaagtagaagacaccgctgcgcgcctgcaaagcaggggt
attagcgcggcggcctatcatgccgggctggaaaataatgtccgcgccgacgtgcaggag
aaattccagcgcgatgatctgcaaattgtggtggcgacggtggcgttcggcatgggcatc
aataaaccaaacgttcgcttcgtggtccactttgatattccgcgcaatatcgaatcctat
tatcaggaaaccggtcgcgccgggcgtgatggcctgcctgcggaagcgatgctgttttac
gatccggctgatatggcgtggctgcgccgttgtctggaagagaagccgcaggggcagttg
caggatatcgagcgccacaaactcaatgcgatgggcgcgtttgccgaagcgcaaacttgc
cgtcgtctggtattgctgaactattttggcgaagggcgtcaggagccgtgcgggaactgc
gatatctgcctcgatccgccgaaacagtacgacggttcaaccgatgctcagattgccctt
tccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtgattcgt
ggtgctaataaccagcgtatccgcgactatggtcatgacaaactgaaagtctatggtatg
ggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcatctcggc
ctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggccgcgcgcccg
gtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctcaaaccg
aaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaattacgc
aaactgcgtaaatcgattgccgatgaaagtaatgtcccgccgtacgtggtgtttaacgac
gcaaccttgattgagatggctgaacagatgccgatcaccgccagcgaaatgctcagcgtt
aacggcgttgggatgcgcaagctggaacgctttggtaaaccgtttatggcgctgattcgt
gcgcatgtcgatggcgacgacgaagagtag
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